Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7971

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115514 to 116661 16338 mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116954 to 120210 16339 mRNA_7972: 16340 - Hypothetical Protein, at 120428 to 122131 16340

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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115,966 - 16338 mRNA_7970 0.39 -3.4
116,048 + 16338 mRNA_7970 0.47 -1.7
116,051 - 16338 mRNA_7970 0.47 -1.3
116,114 + 16338 mRNA_7970 0.52 -0.1
116,117 + 16338 mRNA_7970 0.53 -0.3
116,135 - 16338 mRNA_7970 0.54 -0.9
116,170 + 16338 mRNA_7970 0.57 -1.6
116,185 - 16338 mRNA_7970 0.58 -2.7
116,267 + 16338 mRNA_7970 0.66 -1.0
116,290 - 16338 mRNA_7970 0.68 -1.9
116,404 + 16338 mRNA_7970 0.78 -3.6
116,430 - 16338 mRNA_7970 0.80 -1.2
116,431 + 16338 mRNA_7970 0.80 -1.1
116,437 - 16338 mRNA_7970 0.80 -3.4
116,440 - 16338 mRNA_7970 0.81 -2.0
116,488 + 16338 mRNA_7970 0.85 0.6
116,586 - -0.9
116,594 - -1.8
116,736 + -2.2
116,793 + 0.5
116,797 - -1.4
117,105 + -3.7
117,159 + 0.7
117,226 - -2.7
117,229 - -1.8
117,247 - -1.0
117,798 - 16339 mRNA_7971 0.26 -1.1
117,918 - 16339 mRNA_7971 0.30 -1.6
117,921 + 16339 mRNA_7971 0.30 -1.1
117,936 - 16339 mRNA_7971 0.30 -2.5
117,963 - 16339 mRNA_7971 0.31 -2.2
117,964 - 16339 mRNA_7971 0.31 -1.6
117,967 + 16339 mRNA_7971 0.31 -0.2
117,985 - 16339 mRNA_7971 0.32 -1.2
118,110 + 16339 mRNA_7971 0.35 -0.7
118,604 - 16339 mRNA_7971 0.51 -0.8
118,682 + 16339 mRNA_7971 0.53 -1.0
118,699 - 16339 mRNA_7971 0.54 0.1
118,707 + 16339 mRNA_7971 0.54 -0.8
118,772 + 16339 mRNA_7971 0.56 -0.2
118,849 + 16339 mRNA_7971 0.58 -1.5
118,888 + 16339 mRNA_7971 0.59 -0.3
118,956 + 16339 mRNA_7971 0.61 -3.4
118,972 - 16339 mRNA_7971 0.62 -2.6
119,169 - 16339 mRNA_7971 0.68 -2.2
119,439 - 16339 mRNA_7971 0.76 0.5
119,513 + 16339 mRNA_7971 0.79 -2.3
119,560 + 16339 mRNA_7971 0.80 -3.1
120,006 + -0.9
120,013 - -0.6
120,198 + -4.0
120,235 - -0.4
120,397 + -1.1
120,420 - -3.1
120,436 + -0.2
120,450 - -2.1
120,564 + -3.3
120,629 + 16340 mRNA_7972 0.12 -0.3
120,648 + 16340 mRNA_7972 0.13 -2.6
120,697 + 16340 mRNA_7972 0.16 0.9
120,975 - 16340 mRNA_7972 0.32 -2.3
120,977 - 16340 mRNA_7972 0.32 0.3
121,000 - 16340 mRNA_7972 0.34 -1.8
121,081 + 16340 mRNA_7972 0.38 0.6
121,081 + 16340 mRNA_7972 0.38 -2.3
121,183 + 16340 mRNA_7972 0.44 -1.2