Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7962

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329 mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330 mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106769 to 107651 16331

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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104,537 + 16329 mRNA_7961 0.48 -1.1
104,710 + 16329 mRNA_7961 0.67 -4.5
104,817 - 16329 mRNA_7961 0.79 -2.3
104,839 - 16329 mRNA_7961 0.82 -1.9
104,902 + 16329 mRNA_7961 0.89 -2.0
104,918 - -1.7
105,104 + -0.4
105,107 - -0.7
105,107 - -2.0
105,110 + -0.1
105,128 - -2.5
105,149 - 2.6
105,246 + -3.1
105,404 - -1.4
105,420 - -0.7
105,458 - -1.5
105,459 - -2.3
105,563 + -0.2
105,648 - 16330 mRNA_7962 0.13 -1.9
105,700 - 16330 mRNA_7962 0.18 -3.2
105,705 + 16330 mRNA_7962 0.19 -3.4
105,722 - 16330 mRNA_7962 0.21 -1.7
105,788 - 16330 mRNA_7962 0.27 -1.8
105,793 + 16330 mRNA_7962 0.28 -1.3
105,964 + 16330 mRNA_7962 0.45 -2.8
105,967 - 16330 mRNA_7962 0.45 -1.6
105,980 + 16330 mRNA_7962 0.47 -0.7
106,118 + 16330 mRNA_7962 0.60 -1.1
106,124 - 16330 mRNA_7962 0.61 -3.3
106,160 + 16330 mRNA_7962 0.65 -1.3
106,166 - 16330 mRNA_7962 0.65 -1.8
106,279 + 16330 mRNA_7962 0.77 0.2
106,282 - 16330 mRNA_7962 0.77 -1.9
106,564 + 1.0
106,567 - -2.1
106,574 + -3.3
106,576 - -4.0
106,610 + -0.1
106,660 + -4.4
106,767 + -1.8
106,769 - -2.1
106,862 - 16331 mRNA_7963 0.11 -2.0
107,061 + 16331 mRNA_7963 0.33 -3.0
107,263 + 16331 mRNA_7963 0.56 -0.7
107,420 + 16331 mRNA_7963 0.74 -4.0
107,430 + 16331 mRNA_7963 0.75 -3.3
107,451 - 16331 mRNA_7963 0.77 -2.1
107,467 + 16331 mRNA_7963 0.79 -2.3