Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7960

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7959: 16327 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 101739 to 102560 16327 mRNA_7960: 16328 - SUPERFAMILY--SSF144232, at 102805 to 103919 16328 mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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101,834 + 16327 mRNA_7959 0.12 -2.0
101,905 + 16327 mRNA_7959 0.20 -1.3
101,907 - 16327 mRNA_7959 0.20 -1.3
102,169 - 16327 mRNA_7959 0.52 -1.5
102,349 - 16327 mRNA_7959 0.74 -1.4
102,457 + 16327 mRNA_7959 0.87 -3.4
102,497 - -1.9
102,660 - -1.0
102,661 + -1.5
102,739 + -0.5
102,745 + -3.1
102,748 - -3.0
102,748 - -1.9
102,752 + -0.6
102,776 + -0.3
102,956 + 16328 mRNA_7960 0.14 -2.1
103,021 - 16328 mRNA_7960 0.19 -2.1
103,060 + 16328 mRNA_7960 0.23 -0.7
103,094 + 16328 mRNA_7960 0.26 -0.7
103,249 + 16328 mRNA_7960 0.40 -0.1
103,249 + 16328 mRNA_7960 0.40 -2.5
103,297 + 16328 mRNA_7960 0.44 -1.0
103,300 + 16328 mRNA_7960 0.44 -2.0
103,303 + 16328 mRNA_7960 0.45 -0.7
103,326 - 16328 mRNA_7960 0.47 -3.1
103,759 + 16328 mRNA_7960 0.86 0.3
103,808 + -0.6
103,816 - -3.1
103,945 - -1.4
103,951 + 0.1
103,951 + -2.9
103,976 + -1.1
104,044 + -3.4
104,204 - 0.3
104,257 + 16329 mRNA_7961 0.16 0.1
104,537 + 16329 mRNA_7961 0.48 -1.1
104,710 + 16329 mRNA_7961 0.67 -4.5
104,817 - 16329 mRNA_7961 0.79 -2.3
104,839 - 16329 mRNA_7961 0.82 -1.9
104,902 + 16329 mRNA_7961 0.89 -2.0
104,918 - -1.7