Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7951

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7950: 16318 - K04802 PCNA proliferating cell nuclear antigen, at 76989 to 79257 16318 mRNA_7951: 16319 - K09527 DNAJC7 DnaJ homolog subfamily C member 7, at 79808 to 82314 16319 mRNA_7952: 16320 - KOG0627 Heat shock transcription factor, at 82566 to 84687 16320

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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79,287 + -1.6
79,343 - -1.3
79,343 - -1.0
79,348 + -0.8
79,394 - -0.8
79,400 + 0.9
79,405 - -0.8
79,409 + -2.4
79,494 + -3.3
79,679 + -2.6
79,798 + -0.4
79,925 - 2.1
79,931 + -2.5
80,080 + 16319 mRNA_7951 0.11 0.1
80,523 + 16319 mRNA_7951 0.29 -1.1
80,524 - 16319 mRNA_7951 0.29 -1.2
80,912 - 16319 mRNA_7951 0.44 -0.4
80,930 - 16319 mRNA_7951 0.45 -3.3
80,931 + 16319 mRNA_7951 0.45 -2.8
81,061 - 16319 mRNA_7951 0.50 -3.5
81,693 + 16319 mRNA_7951 0.75 -2.4
81,831 + 16319 mRNA_7951 0.81 0.2
82,009 + 16319 mRNA_7951 0.88 -2.3
82,091 + -3.7
82,124 + -0.1
82,124 + -2.1
82,228 + -2.2
82,317 - -1.3
82,547 + -1.2
82,592 - -3.5
82,721 - -2.6
83,236 - 16320 mRNA_7952 0.32 -2.2
83,237 + 16320 mRNA_7952 0.32 -0.7