Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7944

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135 16311 mRNA_7944: 16312 - Hypothetical Protein, at 69518 to 70390 16312 mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70630 to 71509 16313

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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68,619 - 16311 mRNA_7943 0.86 -1.9
68,811 + -0.2
68,911 + -0.0
68,924 + -3.9
69,155 + -0.3
69,190 + -0.7
69,341 + -1.5
69,349 - -1.8
69,360 - 0.1
69,361 + -1.4
69,390 + -3.1
69,438 + 0.1
69,654 + 16312 mRNA_7944 0.16 -4.7
69,661 - 16312 mRNA_7944 0.16 -4.3
69,797 - 16312 mRNA_7944 0.32 -0.8
69,944 - 16312 mRNA_7944 0.49 -2.4
69,961 - 16312 mRNA_7944 0.51 -3.5
69,986 + 16312 mRNA_7944 0.54 -2.6
70,064 - 16312 mRNA_7944 0.63 -1.3
70,110 + 16312 mRNA_7944 0.68 -1.1
70,249 + 16312 mRNA_7944 0.84 -1.0
70,269 - 16312 mRNA_7944 0.86 1.1
70,477 - -3.3
70,538 - -2.6
70,775 - 16313 mRNA_7945 0.16 -2.2
70,913 + 16313 mRNA_7945 0.32 -1.9
70,955 + 16313 mRNA_7945 0.37 0.6
70,974 - 16313 mRNA_7945 0.39 0.1
70,989 + 16313 mRNA_7945 0.41 -3.0
71,000 - 16313 mRNA_7945 0.42 -2.9
71,117 - 16313 mRNA_7945 0.55 -0.1
71,235 + 16313 mRNA_7945 0.69 -3.7