Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7943

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62103 to 65141 16310 mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135 16311 mRNA_7944: 16312 - Hypothetical Protein, at 69518 to 70390 16312

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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65,252 + -2.6
65,353 + -3.0
65,464 + 0.6
65,466 - -2.0
65,503 - -0.1
65,562 + -2.2
65,973 - 16311 mRNA_7943 0.12 -1.5
66,101 - 16311 mRNA_7943 0.15 -0.3
66,149 + 16311 mRNA_7943 0.17 -1.8
66,366 - 16311 mRNA_7943 0.23 -1.9
66,390 - 16311 mRNA_7943 0.23 -1.4
66,573 - 16311 mRNA_7943 0.29 -2.1
66,860 - 16311 mRNA_7943 0.37 -0.6
66,950 + 16311 mRNA_7943 0.39 -3.2
67,020 - 16311 mRNA_7943 0.41 -1.7
67,722 - 16311 mRNA_7943 0.61 -1.3
68,240 + 16311 mRNA_7943 0.75 -1.3
68,243 - 16311 mRNA_7943 0.75 -3.8
68,350 + 16311 mRNA_7943 0.78 -1.8
68,619 - 16311 mRNA_7943 0.86 -1.9
68,811 + -0.2
68,911 + -0.0
68,924 + -3.9
69,155 + -0.3
69,190 + -0.7
69,341 + -1.5
69,349 - -1.8
69,360 - 0.1
69,361 + -1.4
69,390 + -3.1
69,438 + 0.1
69,654 + 16312 mRNA_7944 0.16 -4.7
69,661 - 16312 mRNA_7944 0.16 -4.3
69,797 - 16312 mRNA_7944 0.32 -0.8
69,944 - 16312 mRNA_7944 0.49 -2.4
69,961 - 16312 mRNA_7944 0.51 -3.5
69,986 + 16312 mRNA_7944 0.54 -2.6
70,064 - 16312 mRNA_7944 0.63 -1.3
70,110 + 16312 mRNA_7944 0.68 -1.1