Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7937

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7936: 16304 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 52307 to 53072 16304 mRNA_7937: 16305 - KOG0550 Molecular chaperone (DnaJ superfamily), at 53529 to 55424 16305 mRNA_7938: 16306 - Hypothetical Protein, at 55876 to 58183 16306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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52,686 - 16304 mRNA_7936 0.49 -1.1
52,797 - 16304 mRNA_7936 0.64 -1.3
52,826 + 16304 mRNA_7936 0.68 -3.0
52,975 + 16304 mRNA_7936 0.87 -0.9
53,084 - -0.2
53,089 + -3.8
53,095 + -0.9
53,121 - -0.7
53,127 + -1.9
53,134 - -1.5
53,135 + -1.8
53,138 - -1.4
53,176 + -0.6
53,177 - -0.2
53,189 - -0.4
53,199 + -0.4
53,202 + 1.3
53,219 + -2.0
53,460 - -2.9
53,847 + 16305 mRNA_7937 0.17 -1.9
54,045 + 16305 mRNA_7937 0.27 -3.1
54,142 - 16305 mRNA_7937 0.32 -1.9
54,142 - 16305 mRNA_7937 0.32 -0.6
54,199 + 16305 mRNA_7937 0.35 -0.3
54,202 - 16305 mRNA_7937 0.35 -1.2
54,463 + 16305 mRNA_7937 0.49 -0.9
54,629 + 16305 mRNA_7937 0.58 -0.1
55,106 + 16305 mRNA_7937 0.83 -0.9
55,211 - 16305 mRNA_7937 0.89 -1.4
55,524 - 0.2
55,594 - -1.3
55,602 - -1.1
55,616 + -1.6
55,740 + -2.6
55,744 - -1.9
55,792 - -3.1
56,076 + -2.3
56,081 - -1.1
56,229 - 16306 mRNA_7938 0.15 -3.4