Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7920

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22432 to 23509 16287 mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24120 to 24922 16288 mRNA_7921: 16289 - KOG3022 Predicted ATPase, nucleotide-binding, at 25144 to 26524 16289

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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23,214 + 16287 mRNA_7919 0.73 -3.0
23,443 + -0.5
23,865 + -0.5
23,900 + 0.6
23,902 - -0.2
23,950 + -1.1
24,079 + -0.4
24,136 + -1.0
24,299 - 16288 mRNA_7920 0.22 -0.5
24,319 + 16288 mRNA_7920 0.25 -1.3
24,323 - 16288 mRNA_7920 0.25 -0.8
24,434 + 16288 mRNA_7920 0.39 -1.3
24,640 + 16288 mRNA_7920 0.65 0.7
24,923 + -2.2
24,998 - -2.5
25,057 + -2.0
25,077 + -3.6