Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7912

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7911: 16279 - K03015 RPB7, POLR2G DNA-directed RNA polymerase II subunit RPB7, at 1441 to 2386 16279 mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3147 to 4682 16280 mRNA_7913: 16281 - K00234 SDHA, SDH1 succinate dehydrogenase (ubiquinone) flavoprotein subunit, at 4859 to 7568 16281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,601 - -3.5
2,624 + -1.3
2,636 - -2.0
2,650 - -0.9
2,781 + -1.2
2,783 - -1.1
2,928 + -2.5
2,928 + -2.6
2,928 + -1.2
2,929 + -0.5
2,934 - -3.1
2,947 - -2.1
2,951 + -2.1
2,951 + -0.7
2,954 - -0.9
3,110 + -3.2
3,236 + -2.1
3,375 - 16280 mRNA_7912 0.15 3.0
4,339 - 16280 mRNA_7912 0.78 -0.6
4,534 + -1.6
4,534 + -0.7
4,545 + 2.7
4,548 - 0.4
4,702 - -1.7
4,955 + -0.2
5,024 + -2.0