Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7876

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7875: 16243 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1276144 to 1278283 16243 mRNA_7876: 16244 - HMMPfam-Protein of unknown function (DUF4246)-PF14033, at 1278407 to 1280463 16244 mRNA_7877: 16245 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1280772 to 1282226 16245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,277,437 - 16243 mRNA_7875 0.60 -2.1
1,277,593 - 16243 mRNA_7875 0.68 -1.1
1,277,626 + 16243 mRNA_7875 0.69 -0.6
1,277,720 - 16243 mRNA_7875 0.74 -0.9
1,277,831 - 16243 mRNA_7875 0.79 -1.5
1,277,860 - 16243 mRNA_7875 0.80 -1.2
1,277,863 - 16243 mRNA_7875 0.80 -1.4
1,277,870 + 16243 mRNA_7875 0.81 -0.6
1,278,047 + 16243 mRNA_7875 0.89 -2.5
1,278,292 - -1.9
1,278,403 + -2.6
1,278,482 - -1.9
1,278,491 + -0.2
1,278,779 + 16244 mRNA_7876 0.18 -3.6
1,279,010 - 16244 mRNA_7876 0.29 -2.1
1,279,342 - 16244 mRNA_7876 0.45 -0.9
1,279,347 + 16244 mRNA_7876 0.46 -1.7
1,279,434 - 16244 mRNA_7876 0.50 0.2
1,279,556 + 16244 mRNA_7876 0.56 -1.6
1,279,605 - 16244 mRNA_7876 0.58 -2.1
1,279,741 - 16244 mRNA_7876 0.65 -2.1
1,279,909 - 16244 mRNA_7876 0.73 0.5
1,279,968 - 16244 mRNA_7876 0.76 -1.5
1,280,163 - 16244 mRNA_7876 0.85 -2.1
1,280,381 + -1.8
1,280,577 + 0.1
1,280,589 + -1.1
1,280,662 + -1.8
1,280,677 - 1.7
1,280,691 - 0.1
1,280,983 + 16245 mRNA_7877 0.15 -3.2
1,281,005 - 16245 mRNA_7877 0.16 -1.4
1,281,095 + 16245 mRNA_7877 0.22 -0.3
1,281,152 + 16245 mRNA_7877 0.26 -0.0
1,281,187 - 16245 mRNA_7877 0.29 -0.6
1,281,315 + 16245 mRNA_7877 0.37 0.4
1,281,414 - 16245 mRNA_7877 0.44 -4.0