Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7841

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7840: 16208 - K00620 argJ glutamate N-acetyltransferase / amino-acid N-acetyltransferase, at 1182791 to 1184398 16208 mRNA_7841: 16209 - K04728 ATM, TEL1 ataxia telangiectasia mutated family protein, at 1184970 to 1194668 16209 mRNA_7842: 16210 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403, at 1195063 to 1195629 16210

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,184,312 + -2.1
1,184,337 - -3.0
1,184,446 + -0.0
1,184,457 + -1.8
1,184,483 + -1.0
1,184,516 - -0.5
1,184,629 + 0.2
1,184,721 + -2.2
1,184,756 - 0.5
1,184,762 + 0.1
1,184,903 - 0.5
1,184,937 + -1.4
1,185,049 - -2.3
1,185,058 + -2.6
1,185,064 - -0.0
1,186,373 - 16209 mRNA_7841 0.14 -0.3
1,186,535 + 16209 mRNA_7841 0.16 -1.1
1,186,793 - 16209 mRNA_7841 0.19 -0.8
1,187,553 - 16209 mRNA_7841 0.27 1.1
1,187,554 + 16209 mRNA_7841 0.27 -1.8
1,187,824 - 16209 mRNA_7841 0.29 -1.3
1,187,984 + 16209 mRNA_7841 0.31 -2.3
1,188,426 + 16209 mRNA_7841 0.36 -0.2
1,188,448 - 16209 mRNA_7841 0.36 -2.2
1,188,578 + 16209 mRNA_7841 0.37 -2.2
1,188,657 + 16209 mRNA_7841 0.38 -1.7
1,188,707 - 16209 mRNA_7841 0.39 -1.6
1,188,799 + 16209 mRNA_7841 0.39 -0.0
1,188,850 + 16209 mRNA_7841 0.40 1.8
1,188,863 - 16209 mRNA_7841 0.40 -1.9
1,188,916 - 16209 mRNA_7841 0.41 0.5
1,188,991 - 16209 mRNA_7841 0.41 -2.6
1,189,076 - 16209 mRNA_7841 0.42 -2.9
1,189,149 - 16209 mRNA_7841 0.43 -1.8
1,189,248 - 16209 mRNA_7841 0.44 -3.5
1,189,328 - 16209 mRNA_7841 0.45 -1.0
1,189,561 + 16209 mRNA_7841 0.47 -2.4
1,190,011 + 16209 mRNA_7841 0.52 -0.2
1,190,192 + 16209 mRNA_7841 0.54 -2.7
1,190,308 - 16209 mRNA_7841 0.55 -2.1
1,190,309 + 16209 mRNA_7841 0.55 -1.4
1,190,339 - 16209 mRNA_7841 0.55 -2.0
1,190,445 - 16209 mRNA_7841 0.56 -0.6
1,190,732 + 16209 mRNA_7841 0.59 -2.1
1,190,880 - 16209 mRNA_7841 0.61 0.8
1,191,612 + 16209 mRNA_7841 0.68 0.5
1,191,627 - 16209 mRNA_7841 0.69 0.2
1,191,685 + 16209 mRNA_7841 0.69 0.7
1,191,886 + 16209 mRNA_7841 0.71 -0.0
1,191,905 - 16209 mRNA_7841 0.72 -0.0
1,192,023 + 16209 mRNA_7841 0.73 -0.7
1,192,082 + 16209 mRNA_7841 0.73 -0.2
1,192,252 + 16209 mRNA_7841 0.75 -3.0
1,192,345 - 16209 mRNA_7841 0.76 -1.3
1,192,645 + 16209 mRNA_7841 0.79 -1.8
1,193,598 + 16209 mRNA_7841 0.89 -3.5
1,193,698 + 16209 mRNA_7841 0.90 -1.6
1,193,951 - -1.7
1,194,092 + -2.9
1,194,141 + -3.4
1,194,265 - 0.3
1,194,310 + -2.5
1,194,313 - -0.3
1,194,464 + 1.5
1,194,572 + -1.5
1,194,838 + -0.0
1,194,953 + 1.3
1,195,300 + 16210 mRNA_7842 0.42 0.6
1,195,419 + 16210 mRNA_7842 0.63 -0.8
1,195,432 - 16210 mRNA_7842 0.65 -2.1
1,195,436 + 16210 mRNA_7842 0.66 -0.9
1,195,583 + -0.6
1,195,617 + -1.2