Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7817

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7816: 16184 - Hypothetical Protein, at 1134758 to 1135633 16184 mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1135639 to 1138436 16185 mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1138694 to 1141964 16186

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,134,904 + 16184 mRNA_7816 0.17 -3.5
1,134,921 - 16184 mRNA_7816 0.19 -2.1
1,134,929 - 16184 mRNA_7816 0.20 0.1
1,134,933 - 16184 mRNA_7816 0.20 -0.3
1,134,934 + 16184 mRNA_7816 0.20 -0.7
1,135,010 - 16184 mRNA_7816 0.29 -1.9
1,135,070 - 16184 mRNA_7816 0.36 -1.9
1,135,072 - 16184 mRNA_7816 0.36 -0.9
1,135,082 + 16184 mRNA_7816 0.37 -1.6
1,135,082 - 16184 mRNA_7816 0.37 -1.7
1,135,102 + 16184 mRNA_7816 0.39 -0.7
1,135,102 + 16184 mRNA_7816 0.39 -0.6
1,135,104 + 16184 mRNA_7816 0.39 -2.3
1,135,292 - 16184 mRNA_7816 0.61 -0.1
1,135,325 + 16184 mRNA_7816 0.65 -1.1
1,135,374 - 16184 mRNA_7816 0.70 1.4
1,135,520 + 16184 mRNA_7816 0.87 0.8
1,135,535 + 16184 mRNA_7816 0.89 -1.2
1,135,537 - 16184 mRNA_7816 0.89 -3.0
1,135,705 + -2.6
1,135,837 - -1.5
1,136,148 + 16185 mRNA_7817 0.18 0.5
1,136,149 - 16185 mRNA_7817 0.18 0.4
1,136,386 + 16185 mRNA_7817 0.27 -2.5
1,136,721 + 16185 mRNA_7817 0.39 -0.6
1,136,870 - 16185 mRNA_7817 0.44 -1.8
1,136,994 - 16185 mRNA_7817 0.48 -4.0
1,137,197 + 16185 mRNA_7817 0.56 -2.0
1,137,334 + 16185 mRNA_7817 0.61 -2.2
1,137,503 + 16185 mRNA_7817 0.67 -2.6
1,137,569 - 16185 mRNA_7817 0.69 -0.2
1,137,700 - 16185 mRNA_7817 0.74 -0.7
1,137,908 - 16185 mRNA_7817 0.81 -1.4
1,138,070 - 16185 mRNA_7817 0.87 -3.1
1,138,477 - -2.4
1,138,503 + -0.9
1,138,516 - -2.0
1,138,844 - -0.8
1,138,959 - -1.6
1,139,214 - 16186 mRNA_7818 0.16 -0.2
1,139,402 - 16186 mRNA_7818 0.22 -1.8