Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7796

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7795: 16163 - ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006, at 1084196 to 1085821 16163 mRNA_7796: 16164 - K11322 EPC enhancer of polycomb-like protein, at 1086244 to 1089209 16164 mRNA_7797: 16165 - Hypothetical Protein, at 1089462 to 1090208 16165

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,085,291 + 16163 mRNA_7795 0.67 -1.3
1,085,292 - 16163 mRNA_7795 0.67 -4.9
1,085,495 + 16163 mRNA_7795 0.80 -1.9
1,085,897 - -1.6
1,085,914 + -1.3
1,085,937 + -2.1
1,085,939 - -0.6
1,085,966 - 0.2
1,085,971 - -3.6
1,086,960 - 16164 mRNA_7796 0.24 -1.4
1,087,174 + 16164 mRNA_7796 0.31 -2.8
1,087,437 - 16164 mRNA_7796 0.40 -3.2
1,089,482 + -4.9
1,089,606 + 16165 mRNA_7797 0.19 -2.3
1,089,612 + 16165 mRNA_7797 0.20 -0.2
1,089,614 + 16165 mRNA_7797 0.20 0.8
1,089,615 + 16165 mRNA_7797 0.20 0.7
1,089,758 - 16165 mRNA_7797 0.40 -2.3
1,089,765 + 16165 mRNA_7797 0.41 -0.4
1,089,768 - 16165 mRNA_7797 0.41 -2.2
1,089,789 + 16165 mRNA_7797 0.44 -0.7
1,089,790 + 16165 mRNA_7797 0.44 -1.2
1,089,791 + 16165 mRNA_7797 0.44 -0.9
1,089,792 - 16165 mRNA_7797 0.44 0.1
1,089,807 + 16165 mRNA_7797 0.46 -1.0
1,089,809 + 16165 mRNA_7797 0.46 -0.9
1,089,809 - 16165 mRNA_7797 0.46 -4.7
1,089,809 + 16165 mRNA_7797 0.46 1.1
1,089,815 + 16165 mRNA_7797 0.47 1.7
1,089,816 + 16165 mRNA_7797 0.47 -2.4
1,089,828 - 16165 mRNA_7797 0.49 -2.1
1,089,837 - 16165 mRNA_7797 0.50 -1.4
1,089,926 - 16165 mRNA_7797 0.62 0.8
1,089,934 - 16165 mRNA_7797 0.63 -1.7
1,089,942 - 16165 mRNA_7797 0.64 -0.6
1,089,943 - 16165 mRNA_7797 0.64 -2.6
1,089,949 - 16165 mRNA_7797 0.65 -1.4
1,089,951 - 16165 mRNA_7797 0.65 0.9
1,090,059 + 16165 mRNA_7797 0.80 0.8
1,090,098 + 16165 mRNA_7797 0.85 0.0
1,090,108 + 16165 mRNA_7797 0.86 -2.9
1,090,114 - 16165 mRNA_7797 0.87 -1.1
1,090,118 - 16165 mRNA_7797 0.88 -1.7