Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7785

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1060507 to 1063006 16152 mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1063433 to 1065460 16153 mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1066026 to 1067472 16154

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,062,901 + -2.1
1,062,906 + -1.6
1,062,909 - -0.6
1,062,920 + 2.5
1,062,949 + -1.3
1,063,000 - -0.5
1,063,069 - -0.5
1,063,188 - -1.6
1,063,201 + -1.8
1,063,206 + -1.5
1,063,207 - -5.4
1,063,216 - -2.2
1,063,224 + -2.8
1,063,243 + -1.2
1,063,323 - -2.6
1,063,324 - -1.5
1,063,337 - -0.4
1,063,338 + -0.9
1,063,341 - -0.2
1,063,350 - -0.9
1,063,430 - -1.2
1,063,440 + -2.0
1,063,453 - -1.1
1,063,630 + -1.9
1,063,657 + 16153 mRNA_7785 0.11 -0.3
1,063,779 + 16153 mRNA_7785 0.17 -0.4
1,063,936 + 16153 mRNA_7785 0.25 -0.0
1,064,142 - 16153 mRNA_7785 0.35 -1.6
1,064,143 - 16153 mRNA_7785 0.35 -2.2
1,064,203 + 16153 mRNA_7785 0.38 -1.3
1,064,238 - 16153 mRNA_7785 0.40 -2.4
1,064,609 - 16153 mRNA_7785 0.58 -1.0
1,064,650 - 16153 mRNA_7785 0.60 -0.6
1,064,660 - 16153 mRNA_7785 0.61 -3.0
1,064,911 - 16153 mRNA_7785 0.73 -2.5
1,064,952 + 16153 mRNA_7785 0.75 -1.3
1,065,124 + 16153 mRNA_7785 0.83 -2.7
1,065,356 - 0.1
1,065,357 + -2.6
1,065,358 - -1.2
1,065,361 + 0.5
1,065,363 + -1.9
1,065,501 - -0.0
1,065,501 - -0.7
1,065,651 - -1.1
1,065,656 + -0.3
1,065,674 + -1.7
1,065,690 - -2.5
1,065,799 + -1.1
1,065,819 + -2.4
1,066,091 - -2.0
1,066,098 + -0.5
1,066,099 - -0.5
1,066,240 + 16154 mRNA_7786 0.15 -1.0