Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7760

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7760: 16128 - K05607 AUH methylglutaconyl-CoA hydratase, at 1005375 to 1006761 16128 mRNA_7761: 16129 - KOG1176 Acyl-CoA synthetase, at 1006948 to 1009515 16129

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,005,036 - -2.2
1,005,044 - -2.0
1,005,053 - -1.9
1,005,099 - -0.7
1,005,202 - 0.1
1,005,240 + -2.3
1,005,752 + 16128 mRNA_7760 0.27 -2.6
1,005,753 + 16128 mRNA_7760 0.27 0.7
1,006,359 - 16128 mRNA_7760 0.71 -3.7
1,006,387 + 16128 mRNA_7760 0.73 -2.8
1,006,509 + 16128 mRNA_7760 0.82 -1.7
1,006,516 - 16128 mRNA_7760 0.82 -1.4
1,006,638 - -3.9
1,006,781 - -1.3
1,006,794 + -1.6
1,006,814 - -0.6
1,006,828 + -1.0
1,006,828 - -1.3
1,006,830 - 1.1
1,006,832 - -0.2
1,006,833 - -1.3
1,006,837 + -1.5
1,006,848 - -0.7
1,006,852 - -0.5
1,006,852 - -1.4
1,006,866 - -2.1
1,006,867 + 1.0
1,006,868 + -0.2
1,006,872 + -2.0
1,006,875 + -1.3
1,006,875 + -1.2
1,006,879 + 0.0
1,006,879 + 0.4
1,006,880 + -0.6
1,006,880 + -0.2
1,006,881 - -3.7
1,006,883 - -0.9
1,006,892 + -1.9
1,006,892 + -2.1
1,006,895 + -0.6
1,006,898 + -2.7
1,006,899 + -0.2
1,006,900 + -2.7
1,006,901 + -0.1
1,006,901 + -2.3
1,006,904 - -0.2
1,006,905 + -2.0
1,006,905 + -0.3
1,006,915 + -2.4
1,007,031 - -2.9
1,007,033 + -1.5
1,007,068 + -0.9
1,007,187 - -2.5
1,007,280 - 16129 mRNA_7761 0.13 0.6
1,007,585 + 16129 mRNA_7761 0.25 -1.4