Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7722

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925518 to 928664 16089 mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928905 to 930722 16090 mRNA_7723: 16091 - HMMPfam-Domain of unknown function (DUF427)-PF04248, at 931116 to 931814 16091

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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928,675 + -0.7
928,721 + -2.2
928,772 - -3.1
928,777 + -0.9
928,782 + -2.7
928,804 - -2.8
928,808 + -0.9
928,809 - -2.1
928,850 + -1.0
928,851 + -2.3
928,853 - 0.8
928,976 - -1.3
929,012 - 1.3
929,148 + 16090 mRNA_7722 0.13 -2.0
929,284 - 16090 mRNA_7722 0.21 -2.0
929,560 - 16090 mRNA_7722 0.36 -0.0
929,577 - 16090 mRNA_7722 0.37 -1.9
930,052 - 16090 mRNA_7722 0.63 -0.5
930,117 + 16090 mRNA_7722 0.67 -1.2
930,149 + 16090 mRNA_7722 0.68 -0.9
930,294 + 16090 mRNA_7722 0.76 1.1
930,581 - -0.4
930,582 + 0.7
930,680 - -0.7
930,733 - -0.1
930,754 - -1.0
930,758 - -2.3
931,028 - 0.1
931,032 + -1.9
931,144 - -0.2
931,282 + 16091 mRNA_7723 0.24 -1.2
931,309 - 16091 mRNA_7723 0.28 -1.2
931,314 + 16091 mRNA_7723 0.28 -1.2
931,640 - 16091 mRNA_7723 0.75 -1.5