Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7687

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7686: 16054 - K06185 ABCF2 ATP-binding cassette, subfamily F, member 2, at 836407 to 838350 16054 mRNA_7687: 16055 - SUPERFAMILY--SSF48371, at 838504 to 840672 16055 mRNA_7688: 16056 - Hypothetical Protein, at 840776 to 844586 16056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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838,272 + -2.0
838,484 + -0.8
838,565 - -1.1
838,622 + -3.8
838,724 - 16055 mRNA_7687 0.10 -1.9
839,003 - 16055 mRNA_7687 0.23 1.1
839,004 - 16055 mRNA_7687 0.23 -1.3
839,046 + 16055 mRNA_7687 0.25 -2.9
839,148 + 16055 mRNA_7687 0.30 -0.7
839,162 - 16055 mRNA_7687 0.30 -2.8
839,291 + 16055 mRNA_7687 0.36 -2.0
839,407 - 16055 mRNA_7687 0.42 -0.6
839,563 + 16055 mRNA_7687 0.49 -0.8
839,564 - 16055 mRNA_7687 0.49 -0.1
839,632 + 16055 mRNA_7687 0.52 -2.7
839,635 - 16055 mRNA_7687 0.52 -1.7
839,726 + 16055 mRNA_7687 0.56 -0.8
839,769 - 16055 mRNA_7687 0.58 -2.0
839,770 - 16055 mRNA_7687 0.58 -2.1
839,776 - 16055 mRNA_7687 0.59 -1.1
839,893 - 16055 mRNA_7687 0.64 -0.4
839,893 - 16055 mRNA_7687 0.64 0.5
839,901 + 16055 mRNA_7687 0.64 -0.3
839,966 - 16055 mRNA_7687 0.67 -2.6
839,988 + 16055 mRNA_7687 0.68 -2.9
840,006 - 16055 mRNA_7687 0.69 -0.1
840,297 - 16055 mRNA_7687 0.83 -0.1
840,337 + 16055 mRNA_7687 0.85 -0.6
840,619 - -3.0
840,623 - -1.5
840,623 - -1.2
840,624 + -0.7
840,626 - -0.5
840,627 + -3.3
840,774 + 0.4
840,781 + 0.4
840,883 - -3.6
840,920 + -1.0
841,048 - -2.0
841,217 - 16056 mRNA_7688 0.12 -1.1
841,329 - 16056 mRNA_7688 0.15 -0.0
841,364 - 16056 mRNA_7688 0.15 -0.4
841,503 - 16056 mRNA_7688 0.19 -0.4
841,542 - 16056 mRNA_7688 0.20 1.0
841,604 + 16056 mRNA_7688 0.22 1.2
841,651 + 16056 mRNA_7688 0.23 -0.5
841,661 - 16056 mRNA_7688 0.23 -1.1