Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7652

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769234 to 769814 16019 mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770131 to 772818 16020 mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773095 to 776030 16021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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769,177 - -0.8
769,194 + -3.1
769,320 - 16019 mRNA_7651 0.15 -0.0
769,340 - 16019 mRNA_7651 0.18 -1.9
769,341 + 16019 mRNA_7651 0.18 -1.4
769,372 + 16019 mRNA_7651 0.24 -2.3
769,498 - 16019 mRNA_7651 0.45 -1.1
769,941 - -0.4
770,072 + -0.0
770,243 + -0.7
770,281 + -1.3
770,373 - 0.2
770,386 - -0.5
770,681 + 16020 mRNA_7652 0.20 -0.4
770,690 + 16020 mRNA_7652 0.21 -0.1
771,260 - 16020 mRNA_7652 0.42 -3.0
771,295 + 16020 mRNA_7652 0.43 0.2
771,511 + 16020 mRNA_7652 0.51 -0.2
771,526 - 16020 mRNA_7652 0.52 -0.4
772,098 - 16020 mRNA_7652 0.73 -0.7
772,100 + 16020 mRNA_7652 0.73 -1.6
772,288 + 16020 mRNA_7652 0.80 -2.5
772,762 + -0.8
772,763 - 1.6
772,870 - -1.8
772,873 + -2.2
772,881 - -0.2
772,889 + -2.6
772,892 + -0.9
772,894 + -0.6
772,903 + -2.9
772,904 - -1.4
772,904 - -0.8
772,912 + 2.0
772,925 + -0.4
773,052 - -1.0
773,066 - -0.2
773,204 - -3.2