Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7650

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7649: 16017 - K13346 PEX10 peroxin-10, at 764006 to 765401 16017 mRNA_7650: 16018 - K08008 NOX, GP91 NADPH oxidase, at 765571 to 768508 16018 mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769234 to 769814 16019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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765,953 + 16018 mRNA_7650 0.13 -2.8
766,075 - 16018 mRNA_7650 0.17 -1.1
766,095 - 16018 mRNA_7650 0.18 -1.9
766,177 + 16018 mRNA_7650 0.21 -0.4
766,577 + 16018 mRNA_7650 0.34 0.3
766,795 + 16018 mRNA_7650 0.42 0.1
767,063 - 16018 mRNA_7650 0.51 -2.7
767,070 + 16018 mRNA_7650 0.51 -0.9
767,108 + 16018 mRNA_7650 0.52 -2.4
767,277 + 16018 mRNA_7650 0.58 -2.7
767,516 + 16018 mRNA_7650 0.66 -0.7
767,524 - 16018 mRNA_7650 0.66 -0.3
767,711 - 16018 mRNA_7650 0.73 -3.0
767,749 + 16018 mRNA_7650 0.74 -1.0
767,855 - 16018 mRNA_7650 0.78 -2.3
767,968 - 16018 mRNA_7650 0.82 -2.6
768,004 + 16018 mRNA_7650 0.83 -1.3
768,156 - 16018 mRNA_7650 0.88 -1.6
768,161 + 16018 mRNA_7650 0.88 -1.7
768,270 - -2.0
768,454 + -1.5
768,454 - -1.3
768,588 - 1.8
768,896 - 1.1
768,908 + -2.8
768,922 + -0.6
769,015 - -1.6
769,027 - -3.5
769,066 + -0.7
769,177 - -0.8
769,194 + -3.1
769,320 - 16019 mRNA_7651 0.15 -0.0
769,340 - 16019 mRNA_7651 0.18 -1.9
769,341 + 16019 mRNA_7651 0.18 -1.4
769,372 + 16019 mRNA_7651 0.24 -2.3
769,498 - 16019 mRNA_7651 0.45 -1.1