Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7614

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674825 to 677007 15981 mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677486 to 680218 15982 mRNA_7615: 15983 - K06678 YCG1, CAPG condensin complex subunit 3, at 680522 to 684221 15983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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676,678 - 15981 mRNA_7613 0.85 0.1
676,693 + 15981 mRNA_7613 0.86 -1.2
676,843 + -3.3
677,142 + -1.4
677,155 - -1.1
677,170 - -1.1
677,409 - -1.6
677,410 - -2.1
677,431 + -4.5
677,545 - -1.3
677,563 + -4.0
677,568 - -1.5
677,570 + -2.9
677,573 + 0.6
677,608 - -1.2
677,708 - -2.7
677,750 + 0.3
677,834 + 15982 mRNA_7614 0.13 -1.4
677,861 + 15982 mRNA_7614 0.14 0.7
677,870 - 15982 mRNA_7614 0.14 -1.7
677,960 + 15982 mRNA_7614 0.17 2.3
678,021 - 15982 mRNA_7614 0.20 -1.5
678,023 + 15982 mRNA_7614 0.20 -1.0
678,296 - 15982 mRNA_7614 0.30 -1.1
678,433 + 15982 mRNA_7614 0.35 -1.3
678,450 - 15982 mRNA_7614 0.35 -2.1
678,458 + 15982 mRNA_7614 0.36 0.4
678,595 - 15982 mRNA_7614 0.41 -0.7
678,629 + 15982 mRNA_7614 0.42 -2.8
678,978 - 15982 mRNA_7614 0.55 1.2
679,251 + 15982 mRNA_7614 0.65 -1.0
679,387 + 15982 mRNA_7614 0.70 -0.6
679,564 - 15982 mRNA_7614 0.76 -2.9
679,564 - 15982 mRNA_7614 0.76 -1.9
679,792 + 15982 mRNA_7614 0.84 -1.3
679,969 + 0.5
679,975 - -1.7
679,992 + -0.8
680,228 - -0.6
680,250 - 0.1
680,251 + -0.6
680,255 + 0.6
680,289 - 0.0
680,289 - -0.7
680,289 + -4.6
680,290 + -2.6
680,295 - -1.0
680,299 - -1.8
680,305 + -1.9
680,305 + -2.3
680,324 + -0.0
680,450 + -0.8