Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7613

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7612: 15980 - Hypothetical Protein, at 672701 to 674569 15980 mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674825 to 677007 15981 mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677486 to 680218 15982

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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674,664 - -3.1
674,973 - -1.7
675,008 + -1.7
675,131 - 15981 mRNA_7613 0.14 -1.0
675,166 + 15981 mRNA_7613 0.16 -1.0
675,182 - 15981 mRNA_7613 0.16 -0.8
675,571 + 15981 mRNA_7613 0.34 -0.9
675,644 + 15981 mRNA_7613 0.38 -0.3
675,646 - 15981 mRNA_7613 0.38 0.2
675,913 + 15981 mRNA_7613 0.50 -0.8
676,106 + 15981 mRNA_7613 0.59 -2.7
676,678 - 15981 mRNA_7613 0.85 0.1
676,693 + 15981 mRNA_7613 0.86 -1.2
676,843 + -3.3
677,142 + -1.4
677,155 - -1.1
677,170 - -1.1
677,409 - -1.6
677,410 - -2.1
677,431 + -4.5
677,545 - -1.3
677,563 + -4.0
677,568 - -1.5
677,570 + -2.9
677,573 + 0.6
677,608 - -1.2
677,708 - -2.7
677,750 + 0.3
677,834 + 15982 mRNA_7614 0.13 -1.4
677,861 + 15982 mRNA_7614 0.14 0.7
677,870 - 15982 mRNA_7614 0.14 -1.7
677,960 + 15982 mRNA_7614 0.17 2.3