Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7601

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654790 to 656500 15968 mRNA_7601: 15969 - K09521 DNAJC1 DnaJ homolog subfamily C member 1, at 656888 to 658260 15969 mRNA_7602: 15970 - Hypothetical Protein, at 658581 to 659564 15970

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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656,009 + 15968 mRNA_7600 0.71 -1.7
656,036 - 15968 mRNA_7600 0.73 -1.9
656,130 - 15968 mRNA_7600 0.78 -1.9
656,133 + 15968 mRNA_7600 0.78 -0.9
656,173 - 15968 mRNA_7600 0.81 -0.5
656,443 - -1.5
656,550 + 0.8
656,578 - -2.9
656,583 + -0.9
656,586 - -2.1
656,587 - -0.1
656,589 + -0.5
656,589 - -3.3
656,591 + -1.3
656,596 + -1.0
656,596 + -1.0
656,596 + -1.2
656,627 - -0.7
656,691 - -1.7
656,851 + -1.2
656,873 + -1.7
656,888 + -1.6
657,003 - -2.0
657,032 + 15969 mRNA_7601 0.10 -1.9
657,118 - 15969 mRNA_7601 0.17 -1.6
657,296 + 15969 mRNA_7601 0.30 -2.6
657,299 + 15969 mRNA_7601 0.30 -1.2
657,476 - 15969 mRNA_7601 0.43 -3.3
658,050 + 15969 mRNA_7601 0.85 -1.4
658,150 + -1.4
658,188 + -0.6
658,301 - 0.1
658,316 - -1.2
658,324 - -2.8
658,325 - 0.6
658,332 + -1.8
658,336 + -2.6
658,338 - -2.0
658,342 + -0.7
658,527 + -2.9
658,643 + -1.0
658,655 + -1.2
658,753 + 15970 mRNA_7602 0.17 -0.8
658,774 - 15970 mRNA_7602 0.20 -0.1
658,781 + 15970 mRNA_7602 0.20 -1.7
658,787 + 15970 mRNA_7602 0.21 -0.2
658,920 + 15970 mRNA_7602 0.34 -1.0
659,071 - 15970 mRNA_7602 0.50 -4.6