Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7587

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621173 to 621587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621699 to 623748 15955 mRNA_7588: 15956 - Hypothetical Protein, at 623955 to 629387 15956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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620,731 - 15953 mRNA_7585 0.84 -2.8
620,911 - -1.4
620,932 - -0.8
620,933 - -2.3
620,992 + -1.6
621,040 + -2.5
621,331 + 15954 mRNA_7586 0.38 -1.0
621,350 - 15954 mRNA_7586 0.43 -3.4
621,517 + 15954 mRNA_7586 0.83 0.5
621,596 - -1.3
621,600 - -1.1
621,605 + -1.4
621,639 - -4.2
621,640 + -1.6
621,772 - -1.1
621,774 + 0.2
621,788 - -2.7
621,789 + 2.6
621,796 - -2.7
621,960 + 15955 mRNA_7587 0.13 -1.4
622,089 + 15955 mRNA_7587 0.19 -1.1
622,097 + 15955 mRNA_7587 0.19 -0.8
622,097 + 15955 mRNA_7587 0.19 -1.1
622,943 - 15955 mRNA_7587 0.61 0.2
622,995 - 15955 mRNA_7587 0.63 -1.0
623,063 + 15955 mRNA_7587 0.67 -2.9
623,379 + 15955 mRNA_7587 0.82 1.0
623,576 + -0.7
623,878 - -1.4
623,894 + -0.9
624,632 - 15956 mRNA_7588 0.12 -0.9