Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7575

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7574: 15942 - K15275 SLC35B1 solute carrier family 35 (UDP-galactose transporter), member B1, at 600347 to 601742 15942 mRNA_7575: 15943 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-Tetratricopeptide repeat-PF13371,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 602315 to 604765 15943 mRNA_7576: 15944 - K02838 frr, MRRF, RRF ribosome recycling factor, at 604811 to 605906 15944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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601,913 + -1.0
602,308 - -1.4
602,446 - 0.3
602,574 + 15943 mRNA_7575 0.11 -1.0
602,591 - 15943 mRNA_7575 0.11 0.3
602,607 - 15943 mRNA_7575 0.12 -0.1
602,882 - 15943 mRNA_7575 0.23 -0.9
602,905 + 15943 mRNA_7575 0.24 -3.0
603,131 - 15943 mRNA_7575 0.33 -1.8
603,140 + 15943 mRNA_7575 0.34 -1.3
603,158 + 15943 mRNA_7575 0.34 -2.3
603,500 + 15943 mRNA_7575 0.48 -0.5
603,500 + 15943 mRNA_7575 0.48 -2.2
603,624 + 15943 mRNA_7575 0.53 -1.4
603,628 + 15943 mRNA_7575 0.54 -0.5
604,107 - 15943 mRNA_7575 0.73 -1.2
604,322 - 15943 mRNA_7575 0.82 -0.4
604,374 + 15943 mRNA_7575 0.84 -1.0