Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7552

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542848 to 546528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920 mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547720 to 548858 15921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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546,002 - 15919 mRNA_7551 0.86 -2.3
546,120 - 15919 mRNA_7551 0.89 -1.1
546,135 - 15919 mRNA_7551 0.89 -1.5
546,148 + 15919 mRNA_7551 0.90 -0.3
546,238 + -1.6
546,282 + -0.4
546,741 + -1.5
546,868 - -0.1
546,877 - 15920 mRNA_7552 0.10 0.5
547,464 - 0.5
547,583 + -1.8
547,584 - -1.7
547,584 - -0.9
547,585 - -1.1
547,589 + -1.8
547,610 + -1.4
547,611 + -1.0
547,613 + -0.8
547,692 - -2.4
547,698 + 0.6
547,699 - -1.9
547,702 - -2.4
547,703 - -1.4
547,708 - -0.6
547,710 - -3.5
547,714 - -1.5
547,720 - -1.4
547,728 + -2.4
547,731 - -1.8
547,854 - 15921 mRNA_7553 0.12 -0.7
547,870 + 15921 mRNA_7553 0.13 -0.0
548,002 - 15921 mRNA_7553 0.25 -2.2
548,005 - 15921 mRNA_7553 0.25 0.3
548,006 + 15921 mRNA_7553 0.25 -0.2
548,022 + 15921 mRNA_7553 0.27 -2.5