Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7547

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7546: 15914 - K04523 UBQLN, DSK2 ubiquilin, at 532517 to 534299 15914 mRNA_7547: 15915 - Hypothetical Protein, at 534942 to 536762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537029 to 539584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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533,942 - 15914 mRNA_7546 0.80 -3.5
533,948 - 15914 mRNA_7546 0.80 -1.0
533,952 + 15914 mRNA_7546 0.80 -0.1
533,952 + 15914 mRNA_7546 0.80 -0.3
533,961 - 15914 mRNA_7546 0.81 0.7
533,961 - 15914 mRNA_7546 0.81 -2.1
534,091 - 15914 mRNA_7546 0.88 -2.8
534,112 + 15914 mRNA_7546 0.89 -1.9
534,254 - 0.3
534,259 + -3.8
534,259 - -0.9
534,262 + -0.3
534,265 + -0.9
534,265 + -2.4
534,284 + -1.5
534,419 - -1.7
534,550 - -1.7
534,563 - -1.8
534,573 + -2.1
535,413 + 15915 mRNA_7547 0.26 0.8
535,723 - 15915 mRNA_7547 0.43 -0.5
535,750 + 15915 mRNA_7547 0.44 -3.0
536,312 + 15915 mRNA_7547 0.75 -0.8
536,336 - 15915 mRNA_7547 0.77 -1.7
536,342 + 15915 mRNA_7547 0.77 -0.6
536,434 - 15915 mRNA_7547 0.82 -0.6
536,712 - 0.8
536,784 - -1.6
536,793 + -0.2
536,885 - -2.0
536,930 + 0.4
537,063 + 0.2
537,338 - 15916 mRNA_7548 0.12 1.4
537,378 + 15916 mRNA_7548 0.14 -1.2
537,470 + 15916 mRNA_7548 0.17 -1.4