Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7539

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519946 to 522544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522757 to 524526 15908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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518,947 + -3.5
518,959 - -1.1
518,977 + -2.4
519,067 + -0.7
519,115 + -2.2
519,121 - -0.8
519,125 + -4.7
519,142 + -0.4
519,146 - 0.5
519,157 + -0.7
519,162 + -1.8
519,189 - -2.2
519,199 - -2.8
519,226 - -1.5
519,244 - -1.7
519,265 + -0.4
519,373 - 0.8
519,386 - -1.7
519,515 - -3.0
519,530 - -3.1
519,542 + -0.4
519,550 - -2.3
519,552 - -1.4
519,554 + -0.5
519,692 - -3.6
520,117 - -0.6
520,573 + 15907 mRNA_7539 0.24 -3.1
521,159 - 15907 mRNA_7539 0.47 0.5
521,404 - 15907 mRNA_7539 0.56 -2.1
521,446 + 15907 mRNA_7539 0.58 -0.8
521,453 + 15907 mRNA_7539 0.58 0.1
521,827 - 15907 mRNA_7539 0.72 -4.2
522,156 + 15907 mRNA_7539 0.85 0.5
522,287 + -2.2
522,303 - 0.8
522,387 - -3.5
522,402 - -3.9
522,451 - -1.7
522,484 + -2.1
522,623 - -1.5
522,625 + -1.6
522,627 + 1.6
522,628 + -0.0
522,630 - -2.3
522,633 + -2.5
522,646 + 0.3
522,653 - -2.4
522,659 + -1.1
522,671 + -1.7
522,682 - -3.4
522,786 - -1.0
522,811 - -0.3