Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7534

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507910 to 511338 15901 mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511662 to 512740 15902 mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512882 to 513517 15903

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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510,822 - 15901 mRNA_7533 0.85 -1.2
510,977 - 15901 mRNA_7533 0.89 -0.7
511,246 - -1.2
511,260 - -1.0
511,396 + -1.3
511,415 + -3.2
511,425 + -0.6
511,550 - -1.6
511,566 + -1.0
511,708 + -2.9
511,845 - 15902 mRNA_7534 0.17 1.4
511,849 + 15902 mRNA_7534 0.17 -1.6
511,850 - 15902 mRNA_7534 0.17 0.3
512,001 + 15902 mRNA_7534 0.31 -1.4
512,013 - 15902 mRNA_7534 0.33 -1.2
512,013 + 15902 mRNA_7534 0.33 -2.0
512,128 - 15902 mRNA_7534 0.43 -2.2
512,255 + 15902 mRNA_7534 0.55 -1.7
512,295 - 15902 mRNA_7534 0.59 -1.8
512,433 + 15902 mRNA_7534 0.71 1.4
512,697 - -0.6
512,720 - -0.0
512,721 + -2.3
512,735 + 0.2
512,738 - -0.9
512,739 + -2.7
513,583 - -1.8
513,597 + -1.5
513,599 - -1.1
513,728 + -0.6