Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7533

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505603 to 507822 15900 mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507910 to 511338 15901 mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511662 to 512740 15902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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507,139 - 15900 mRNA_7532 0.69 0.1
507,450 - 15900 mRNA_7532 0.83 -2.2
508,026 + -3.0
508,225 - -2.6
508,552 - 15901 mRNA_7533 0.19 -2.1
508,608 - 15901 mRNA_7533 0.20 -1.8
508,940 - 15901 mRNA_7533 0.30 -3.7
509,724 - 15901 mRNA_7533 0.53 0.4
509,806 + 15901 mRNA_7533 0.55 -0.0
509,819 - 15901 mRNA_7533 0.56 -2.7
509,981 + 15901 mRNA_7533 0.60 -3.0
510,384 + 15901 mRNA_7533 0.72 1.7
510,822 - 15901 mRNA_7533 0.85 -1.2
510,977 - 15901 mRNA_7533 0.89 -0.7
511,246 - -1.2
511,260 - -1.0
511,396 + -1.3
511,415 + -3.2
511,425 + -0.6
511,550 - -1.6
511,566 + -1.0
511,708 + -2.9
511,845 - 15902 mRNA_7534 0.17 1.4
511,849 + 15902 mRNA_7534 0.17 -1.6
511,850 - 15902 mRNA_7534 0.17 0.3
512,001 + 15902 mRNA_7534 0.31 -1.4
512,013 - 15902 mRNA_7534 0.33 -1.2
512,013 + 15902 mRNA_7534 0.33 -2.0
512,128 - 15902 mRNA_7534 0.43 -2.2
512,255 + 15902 mRNA_7534 0.55 -1.7
512,295 - 15902 mRNA_7534 0.59 -1.8