Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7516

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473987 to 475256 15883 mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475785 to 476732 15884 mRNA_7517: 15885 - Hypothetical Protein, at 476971 to 478237 15885

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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474,788 + 15883 mRNA_7515 0.63 -0.2
474,789 - 15883 mRNA_7515 0.63 -0.8
474,796 + 15883 mRNA_7515 0.64 -2.4
474,796 + 15883 mRNA_7515 0.64 -2.1
474,798 + 15883 mRNA_7515 0.64 -0.7
474,804 + 15883 mRNA_7515 0.64 -2.1
474,818 - 15883 mRNA_7515 0.65 1.1
474,833 + 15883 mRNA_7515 0.67 -3.5
474,833 - 15883 mRNA_7515 0.67 -0.3
474,844 - 15883 mRNA_7515 0.67 -3.7
474,849 + 15883 mRNA_7515 0.68 -1.5
474,862 - 15883 mRNA_7515 0.69 -2.4
474,872 - 15883 mRNA_7515 0.70 -3.1
474,876 - 15883 mRNA_7515 0.70 -1.4
474,897 - 15883 mRNA_7515 0.72 -4.2
474,903 + 15883 mRNA_7515 0.72 -1.4
474,905 + 15883 mRNA_7515 0.72 -2.0
474,927 + 15883 mRNA_7515 0.74 -1.5
474,928 + 15883 mRNA_7515 0.74 -0.9
474,937 - 15883 mRNA_7515 0.75 -2.1
474,949 - 15883 mRNA_7515 0.76 -1.7
474,981 + 15883 mRNA_7515 0.78 -2.3
475,001 - 15883 mRNA_7515 0.80 -2.4
475,009 - 15883 mRNA_7515 0.80 -3.3
475,027 + 15883 mRNA_7515 0.82 -1.1
475,033 - 15883 mRNA_7515 0.82 -1.2
475,043 + 15883 mRNA_7515 0.83 -0.1
475,063 - 15883 mRNA_7515 0.85 -0.6
475,064 + 15883 mRNA_7515 0.85 -0.4
475,066 + 15883 mRNA_7515 0.85 -3.2
475,225 - -2.6
475,314 + -2.2
475,317 - -3.3
475,330 - -0.6
475,336 + -1.8
475,338 + -0.8
475,340 + -3.3
475,365 - -1.2
475,490 - -3.0
475,494 - -2.0
475,513 + -4.2
475,549 + 1.8
475,647 - -1.8
475,651 - -2.2
475,664 - -0.7
475,672 - -0.2
475,682 - -0.4
475,686 + -2.1
475,820 - -0.7
475,959 - 15884 mRNA_7516 0.18 -1.4
476,631 - 15884 mRNA_7516 0.89 0.5
476,649 - -2.8
476,740 - -2.6
476,767 + -4.2
476,796 + -2.3
476,855 - -1.4
476,855 - -1.1
476,859 - -0.9
476,863 + 1.8
476,894 + -0.7
476,977 - -0.4
476,986 - -2.3
476,999 - -0.1
477,028 + -1.9
477,036 + -3.1
477,117 - 15885 mRNA_7517 0.12 -0.3
477,125 + 15885 mRNA_7517 0.12 -2.5
477,136 - 15885 mRNA_7517 0.13 -1.1
477,140 - 15885 mRNA_7517 0.13 -1.1
477,141 - 15885 mRNA_7517 0.13 -2.6
477,141 - 15885 mRNA_7517 0.13 -0.1
477,149 + 15885 mRNA_7517 0.14 -1.8
477,152 - 15885 mRNA_7517 0.14 -0.9
477,156 - 15885 mRNA_7517 0.15 -0.8
477,158 - 15885 mRNA_7517 0.15 -0.7
477,167 + 15885 mRNA_7517 0.15 -0.3
477,171 - 15885 mRNA_7517 0.16 -2.2
477,189 + 15885 mRNA_7517 0.17 -1.2
477,210 + 15885 mRNA_7517 0.19 -1.7
477,216 - 15885 mRNA_7517 0.19 -2.3
477,367 + 15885 mRNA_7517 0.31 -2.0
477,471 - 15885 mRNA_7517 0.39 -3.0