Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7510

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7509: 15877 - K11548 NUF2, CDCA1 kinetochore protein Nuf2, at 459661 to 461495 15877 mRNA_7510: 15878 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 461647 to 466734 15878 mRNA_7511: 15879 - K01507 ppa inorganic pyrophosphatase, at 466994 to 468563 15879

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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461,544 - -2.0
461,675 - -1.0
461,844 + -2.0
461,859 + 0.3
465,173 - 15878 mRNA_7510 0.69 -1.8
465,740 - 15878 mRNA_7510 0.80 -1.4
465,869 - 15878 mRNA_7510 0.83 -0.3
466,047 - 15878 mRNA_7510 0.86 -1.2
466,154 + 15878 mRNA_7510 0.89 -2.6
466,177 + 15878 mRNA_7510 0.89 -3.4
466,184 + 15878 mRNA_7510 0.89 -2.6
466,188 + 15878 mRNA_7510 0.89 -1.9
466,191 + 15878 mRNA_7510 0.89 -0.9
466,356 + -0.6
466,460 + -4.0
466,467 - -0.5
466,469 + -2.6
466,472 + -2.0
466,479 + -3.7
466,611 + -2.2
466,613 + -3.4
466,634 + -0.7
466,738 - -2.1
466,751 - -2.3
466,753 - -1.1
466,758 + -1.3
466,783 + -1.1
466,885 - -1.3
466,905 + -2.1
466,907 - -1.1
466,914 + -1.0
466,916 + -0.3
466,922 - -1.7
466,929 - -1.7