Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7493

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413900 to 421307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421579 to 423387 15861 mRNA_7494: 15862 - K05760 PXN paxillin, at 423513 to 425436 15862

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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420,648 - -0.9
420,869 + -0.9
420,939 - -0.5
420,957 - 0.8
421,093 - -0.6
421,120 - -2.7
421,253 + -2.4
421,408 - -3.3
421,665 - -0.5
421,666 - -1.9
421,677 - -1.4
421,678 - -1.9
421,681 - -1.4
421,689 - 1.5
421,690 + 0.1
421,692 - -1.5
421,694 + -0.5
421,697 + -2.4
421,842 + 15861 mRNA_7493 0.15 -0.6
421,969 - 15861 mRNA_7493 0.22 0.1
421,970 - 15861 mRNA_7493 0.22 -3.0
421,976 + 15861 mRNA_7493 0.22 0.0
421,988 - 15861 mRNA_7493 0.23 0.9
422,126 + 15861 mRNA_7493 0.30 -0.7
422,272 + 15861 mRNA_7493 0.38 -1.3
422,307 + 15861 mRNA_7493 0.40 -0.3
422,378 + 15861 mRNA_7493 0.44 -1.6
422,445 + 15861 mRNA_7493 0.48 -0.4
422,574 - 15861 mRNA_7493 0.55 -1.1
422,580 + 15861 mRNA_7493 0.55 -1.6
422,708 + 15861 mRNA_7493 0.62 -2.1
423,359 - -1.1
423,359 + -1.5
423,715 + 15862 mRNA_7494 0.10 -0.6
424,015 - 15862 mRNA_7494 0.26 -0.4
424,144 - 15862 mRNA_7494 0.33 -2.4
424,281 - 15862 mRNA_7494 0.40 -2.0