Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7490

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408031 to 409638 15857 mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409726 to 411732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411819 to 412834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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408,908 - 15857 mRNA_7489 0.55 1.3
409,011 - 15857 mRNA_7489 0.61 -1.3
409,089 + 15857 mRNA_7489 0.66 -4.0
409,231 + 15857 mRNA_7489 0.75 -2.5
409,386 - 15857 mRNA_7489 0.84 -0.8
409,501 + -1.1
409,502 + -2.6
409,503 - -2.9
409,507 - 0.4
409,653 - -0.8
409,665 - -2.2
409,669 - -1.5
409,669 + 1.3
409,772 + -3.0
409,803 - -1.5
409,954 + 15858 mRNA_7490 0.11 -1.4
410,091 - 15858 mRNA_7490 0.18 -1.3
410,124 - 15858 mRNA_7490 0.20 -1.7
410,276 + 15858 mRNA_7490 0.27 -2.4
410,675 - 15858 mRNA_7490 0.47 1.1
410,858 + 15858 mRNA_7490 0.56 -3.8
411,007 - 15858 mRNA_7490 0.64 -0.7
411,143 + 15858 mRNA_7490 0.71 -0.3
411,566 - -0.7
411,739 + -0.6
411,748 - -3.4
411,765 - 0.4
411,871 - -2.6
411,895 + -0.7
412,000 - 15859 mRNA_7491 0.18 -1.4
412,034 + 15859 mRNA_7491 0.21 -1.9
412,036 - 15859 mRNA_7491 0.21 -1.5
412,037 + 15859 mRNA_7491 0.21 -2.6
412,195 + 15859 mRNA_7491 0.37 0.6
412,195 + 15859 mRNA_7491 0.37 -2.3
412,195 + 15859 mRNA_7491 0.37 -2.5
412,200 - 15859 mRNA_7491 0.38 -0.8
412,461 + 15859 mRNA_7491 0.63 0.1
412,481 - 15859 mRNA_7491 0.65 -2.1