Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403840 to 407882 15856 mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408031 to 409638 15857 mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409726 to 411732 15858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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407,117 + 15856 mRNA_7488 0.81 -1.2
407,162 + 15856 mRNA_7488 0.82 0.4
407,556 - 0.8
407,566 - -2.2
407,856 - -2.8
407,902 - -0.5
408,016 + -3.8
408,330 + 15857 mRNA_7489 0.19 -0.9
408,409 - 15857 mRNA_7489 0.24 -1.6
408,438 - 15857 mRNA_7489 0.25 -3.8
408,462 - 15857 mRNA_7489 0.27 -2.0
408,908 - 15857 mRNA_7489 0.55 1.3
409,011 - 15857 mRNA_7489 0.61 -1.3
409,089 + 15857 mRNA_7489 0.66 -4.0
409,231 + 15857 mRNA_7489 0.75 -2.5
409,386 - 15857 mRNA_7489 0.84 -0.8
409,501 + -1.1
409,502 + -2.6
409,503 - -2.9
409,507 - 0.4
409,653 - -0.8
409,665 - -2.2
409,669 - -1.5
409,669 + 1.3
409,772 + -3.0
409,803 - -1.5
409,954 + 15858 mRNA_7490 0.11 -1.4
410,091 - 15858 mRNA_7490 0.18 -1.3
410,124 - 15858 mRNA_7490 0.20 -1.7
410,276 + 15858 mRNA_7490 0.27 -2.4