Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7477

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378155 to 380112 15844 mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380479 to 382307 15845 mRNA_7478: 15846 - Hypothetical Protein, at 382554 to 382817 15846 mRNA_7479: 15847 - Hypothetical Protein, at 383023 to 384509 15847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,787 - 15844 mRNA_7476 0.83 -0.4
380,000 + -2.5
380,087 + -1.7
380,093 - -0.6
380,119 + -1.2
380,140 - -1.9
380,234 + -3.4
380,235 - -3.0
380,235 + 0.6
380,236 + -2.5
380,356 + -1.6
380,359 + -4.2
380,370 - -1.2
380,384 + 0.0
380,408 - -3.1
380,415 - 0.9
380,420 - -1.4
380,422 - -0.8
380,442 + -1.5
380,546 + -1.2
380,582 - -1.0
380,588 - -1.0
380,589 + -2.1
380,590 + 0.8
380,592 + -1.5
380,601 + -1.3
380,618 + -0.8
380,705 + 15845 mRNA_7477 0.12 -2.2
380,705 - 15845 mRNA_7477 0.12 -2.2
380,719 + 15845 mRNA_7477 0.13 -1.1
380,724 + 15845 mRNA_7477 0.13 -1.8
380,732 - 15845 mRNA_7477 0.14 -3.1
380,734 - 15845 mRNA_7477 0.14 1.1
380,735 - 15845 mRNA_7477 0.14 -2.6
380,737 - 15845 mRNA_7477 0.14 -3.8
380,740 + 15845 mRNA_7477 0.14 -1.6
380,743 + 15845 mRNA_7477 0.14 -3.2
380,746 - 15845 mRNA_7477 0.15 -0.8
380,752 + 15845 mRNA_7477 0.15 -1.4
380,756 + 15845 mRNA_7477 0.15 -1.4
380,758 + 15845 mRNA_7477 0.15 -0.7
380,759 + 15845 mRNA_7477 0.15 -0.7
380,769 - 15845 mRNA_7477 0.16 0.3
380,881 + 15845 mRNA_7477 0.22 0.4
380,884 + 15845 mRNA_7477 0.22 0.3
380,889 - 15845 mRNA_7477 0.22 0.0
380,912 - 15845 mRNA_7477 0.24 -3.0
381,022 - 15845 mRNA_7477 0.30 -1.7
381,187 - 15845 mRNA_7477 0.39 -0.9
381,292 - 15845 mRNA_7477 0.44 -2.4
381,323 - 15845 mRNA_7477 0.46 -0.2
381,327 + 15845 mRNA_7477 0.46 -0.2
381,475 + 15845 mRNA_7477 0.54 0.5
381,909 - 15845 mRNA_7477 0.78 -1.0
382,347 - 0.4
382,347 + -2.5
382,352 - 1.4
382,464 - -1.3
382,623 + 15846 mRNA_7478 0.26 0.1
382,624 - 15846 mRNA_7478 0.27 -3.0
382,653 + 15846 mRNA_7478 0.38 -0.6
382,655 + 15846 mRNA_7478 0.38 -0.1
382,934 + 2.3
382,937 - 0.0
382,937 + -4.1
383,256 + 15847 mRNA_7479 0.16 1.6
383,256 + 15847 mRNA_7479 0.16 -0.3