Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7466

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340933 to 344642 15833 mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345181 to 349645 15834 mRNA_7467: 15835 - Hypothetical Protein, at 349793 to 351109 15835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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345,168 + -1.7
345,690 + 15834 mRNA_7466 0.11 -1.2
345,893 + 15834 mRNA_7466 0.16 -1.9
345,955 - 15834 mRNA_7466 0.17 0.2
345,990 + 15834 mRNA_7466 0.18 -1.9
346,107 + 15834 mRNA_7466 0.21 -0.6
346,122 - 15834 mRNA_7466 0.21 0.4
346,398 + 15834 mRNA_7466 0.27 -2.4
346,518 - 15834 mRNA_7466 0.30 -0.6
346,969 + 15834 mRNA_7466 0.40 -2.7
347,247 - 15834 mRNA_7466 0.46 -1.1
347,426 + 15834 mRNA_7466 0.50 -3.1
347,474 + 15834 mRNA_7466 0.51 -0.9
347,650 - 15834 mRNA_7466 0.55 -1.1
347,799 - 15834 mRNA_7466 0.59 -0.6
347,874 - 15834 mRNA_7466 0.60 -1.7
348,188 + 15834 mRNA_7466 0.67 -3.9
348,415 + 15834 mRNA_7466 0.72 -2.9
348,587 - 15834 mRNA_7466 0.76 -1.3
348,722 - 15834 mRNA_7466 0.79 -2.8
349,006 + 15834 mRNA_7466 0.86 -1.3
349,279 + 0.1
349,279 + -0.4
349,293 + -1.3
349,391 + -1.3
349,409 + -2.8
349,439 - -1.2
349,449 + -0.9
349,569 - -3.2
349,571 - -0.9
349,579 - -1.1
349,579 - -1.1
349,582 - -1.4
349,725 + 0.5
349,744 + 0.8
349,749 + 1.8
349,904 - 0.8
350,015 - 15835 mRNA_7467 0.17 -1.2
350,022 - 15835 mRNA_7467 0.17 -1.7
350,027 + 15835 mRNA_7467 0.18 0.5
350,136 + 15835 mRNA_7467 0.26 -1.7
350,315 - 15835 mRNA_7467 0.40 0.0
350,320 + 15835 mRNA_7467 0.40 0.5
350,324 - 15835 mRNA_7467 0.40 -0.2
350,337 - 15835 mRNA_7467 0.41 -4.3
350,486 - 15835 mRNA_7467 0.53 -1.2
350,587 - 15835 mRNA_7467 0.60 -2.5
350,617 + 15835 mRNA_7467 0.63 -1.6