Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7428

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251137 to 252658 15796 mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252711 to 255477 15797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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250,193 + -0.3
250,239 - -1.0
250,361 + -1.1
250,414 + -1.5
250,504 - -0.4
250,528 - -1.1
250,587 + 1.1
250,694 + -0.4
250,710 + 1.3
250,745 - -1.4
250,782 + -0.3
250,806 - -1.7
250,838 + -2.0
250,838 - -2.5
250,854 + 0.5
250,957 - -0.4
250,958 - -2.0
250,963 + -1.5
250,964 + -1.4
250,973 + -1.1
250,983 + -1.7
251,103 + 0.1
251,291 - 15796 mRNA_7428 0.10 -2.0
252,155 - 15796 mRNA_7428 0.67 -2.8
252,169 + 15796 mRNA_7428 0.68 -1.8
252,622 + 0.1
252,895 + -1.0
253,018 - 15797 mRNA_7429 0.11 -0.5
253,050 - 15797 mRNA_7429 0.12 -0.6
253,513 - 15797 mRNA_7429 0.29 -1.8