Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7397

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179186 to 180946 15764 mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181138 to 183665 15765 mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184149 to 185888 15766

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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180,415 + 15764 mRNA_7396 0.70 -2.6
181,021 - 0.4
181,036 - -0.8
181,040 + 0.3
181,041 - 0.6
181,054 - -3.5
181,055 - -0.3
181,067 + -1.4
181,067 - -1.8
181,075 - -0.1
181,075 - -1.4
181,075 + 0.8
181,075 - 0.4
181,081 + -1.5
181,081 + -1.5
181,209 + -1.9
181,212 - -0.7
181,222 + -3.4
181,245 - -1.5
181,344 - -1.3
181,373 + -2.0
181,377 + -2.5
181,412 + 15765 mRNA_7397 0.11 -1.0
181,425 + 15765 mRNA_7397 0.11 -0.6
181,430 + 15765 mRNA_7397 0.12 -1.2
181,431 + 15765 mRNA_7397 0.12 -1.2
181,532 - 15765 mRNA_7397 0.16 0.6
181,537 + 15765 mRNA_7397 0.16 -2.3
181,544 + 15765 mRNA_7397 0.16 -0.0
182,604 - 15765 mRNA_7397 0.58 -1.4
182,733 - 15765 mRNA_7397 0.63 -2.8
182,747 + 15765 mRNA_7397 0.64 -2.6
182,750 - 15765 mRNA_7397 0.64 -1.0
182,874 - 15765 mRNA_7397 0.69 -1.8
183,047 + 15765 mRNA_7397 0.76 -2.5
183,142 - 15765 mRNA_7397 0.79 -1.6
183,174 - 15765 mRNA_7397 0.81 -1.3
183,181 - 15765 mRNA_7397 0.81 -1.0
183,301 - 15765 mRNA_7397 0.86 -1.7
183,314 - 15765 mRNA_7397 0.86 -0.0
183,447 + -0.3
183,742 + 1.3
183,780 + -0.9
183,892 - -4.6
183,901 + 0.8
183,903 - -1.6
183,905 - -0.3
183,907 - -1.0
183,907 - -1.8
183,929 + -0.2
183,940 + -0.3
183,944 - 0.8
183,951 - -2.0
183,959 - -3.6
183,993 + -2.2
183,993 - -0.7
183,995 + -2.0
184,003 - -0.6
184,003 + -1.3
184,007 - 0.2
184,008 + 0.3
184,054 + -1.8
184,066 - -0.7
184,078 + -2.2
184,078 + 0.5
184,189 - -1.0
184,221 - -1.3
184,348 - 15766 mRNA_7398 0.11 -0.1
184,358 + 15766 mRNA_7398 0.12 -3.0
184,360 - 15766 mRNA_7398 0.12 -0.2
184,569 + 15766 mRNA_7398 0.24 -0.5