Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7393

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7392: 15760 - Hypothetical Protein, at 171609 to 172297 15760 mRNA_7393: 15761 - HMMPfam-Velvet factor-PF11754, at 172471 to 174336 15761 mRNA_7394: 15762 - KOG0569 Permease of the major facilitator superfamily, at 175289 to 177598 15762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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171,486 - -2.8
172,071 + 15760 mRNA_7392 0.67 0.5
172,940 - 15761 mRNA_7393 0.25 -2.7
173,243 - 15761 mRNA_7393 0.41 -0.9
173,678 - 15761 mRNA_7393 0.65 -2.9
173,843 + 15761 mRNA_7393 0.74 -0.4
173,843 + 15761 mRNA_7393 0.74 0.8
174,017 + 15761 mRNA_7393 0.83 -1.9
174,264 - 0.8
174,288 + 0.3
174,408 - -0.9
174,445 + 0.6
174,446 + -1.7
174,569 - -0.5
174,579 - -2.6
174,582 - -1.1
174,584 - -0.4
174,593 + -1.5
174,597 - -1.0
174,601 + -2.3
174,606 - -2.9
174,618 - -1.1
174,622 + -0.8
174,622 + 1.3
174,634 + -0.9
174,636 + -2.8
174,639 - -1.5
174,652 - -1.2
174,662 - -0.5
174,707 + 0.1
174,713 + 0.3
174,730 - 0.2
174,747 - -1.2
174,749 - -0.7
174,812 + -0.4
174,815 + 0.4
174,826 + -1.7
174,852 + -0.2
174,852 + -0.9
174,853 - 1.1
174,861 - 0.2
174,866 - -0.2
174,877 + -0.9
174,888 - 0.0
174,889 - -0.6
174,893 + -2.0
174,893 - -4.4
174,898 + -0.2
174,907 + 0.3
174,911 - -1.2
174,912 - -0.6
174,912 - -1.8
174,914 + -2.0
174,919 + -2.4
174,927 + -0.8
174,939 + -2.0
174,942 + -0.6
175,026 - -3.9
175,055 + -1.3
175,071 - -1.3
175,077 - -0.8
175,079 - -1.5
175,215 - -0.1
175,222 + -1.4