Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7385

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152913 to 154132 15752 mRNA_7385: 15753 - ProSiteProfiles-Ubiquitin-interacting motif (UIM) repeat profile.-PS50330, at 154422 to 157963 15753 mRNA_7386: 15754 - HMMPfam-F-box-like-PF12937, at 158123 to 159294 15754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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154,178 + -2.9
154,210 - -1.0
154,217 + -1.2
154,239 + -2.1
154,256 + -1.1
154,344 - -2.4
154,352 + 0.2
154,353 - -3.3
154,358 - -1.3
154,361 + 0.4
154,364 - -2.8
154,371 - -1.7
154,375 + -1.6
154,379 - -2.0
154,382 + -0.6
154,383 + -0.4
154,404 + -1.1
154,411 - -0.6
154,528 - -0.7
154,668 + 0.1
154,814 - 15753 mRNA_7385 0.11 0.2
154,853 - 15753 mRNA_7385 0.12 -0.5
155,279 - 15753 mRNA_7385 0.24 -3.4
155,419 + 15753 mRNA_7385 0.28 -0.4
156,040 + 15753 mRNA_7385 0.46 -3.9
156,182 - 15753 mRNA_7385 0.50 -2.4
156,367 - 15753 mRNA_7385 0.55 -2.5
156,566 + 15753 mRNA_7385 0.61 -0.8
157,008 - 15753 mRNA_7385 0.73 -1.4
157,199 + 15753 mRNA_7385 0.78 -0.4
157,295 - 15753 mRNA_7385 0.81 -0.4
157,296 + 15753 mRNA_7385 0.81 -1.2
157,487 + 15753 mRNA_7385 0.87 -1.1
157,652 + -1.5
157,742 - -0.5
157,862 - -1.6
158,223 - 1.7
158,329 + 15754 mRNA_7386 0.18 0.3
158,333 - 15754 mRNA_7386 0.18 -0.4
158,399 - 15754 mRNA_7386 0.24 -1.9
158,492 + 15754 mRNA_7386 0.31 -1.7
158,496 - 15754 mRNA_7386 0.32 -0.5
158,508 + 15754 mRNA_7386 0.33 -1.2