Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7376

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7375: 15743 - HMMPfam-Chromosome segregation protein Csm1/Pcs1-PF12539, at 126034 to 127845 15743 mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128141 to 130355 15744 mRNA_7377: 15745 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 130572 to 131007 15745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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127,832 + 0.7
127,965 - -0.8
127,973 + 0.1
128,074 + -2.5
128,401 - 15744 mRNA_7376 0.12 -1.3
128,401 - 15744 mRNA_7376 0.12 -0.9
128,543 - 15744 mRNA_7376 0.18 -1.3
128,556 + 15744 mRNA_7376 0.19 -3.2
128,584 + 15744 mRNA_7376 0.20 -1.9
128,684 - 15744 mRNA_7376 0.25 -1.4
129,125 - 15744 mRNA_7376 0.44 -1.4
129,128 + 15744 mRNA_7376 0.45 -1.1
129,137 - 15744 mRNA_7376 0.45 -0.6
129,545 - 15744 mRNA_7376 0.63 -1.7
129,565 + 15744 mRNA_7376 0.64 -3.1
129,848 - 15744 mRNA_7376 0.77 -1.2
130,075 - 15744 mRNA_7376 0.87 -2.3
130,123 - 15744 mRNA_7376 0.89 -1.8
130,132 + 15744 mRNA_7376 0.90 -2.5
130,162 + -1.4
130,418 - -2.8
130,433 - -2.6
130,436 - 1.7
130,444 + -1.5
130,448 + 0.3
130,586 - -2.9
130,595 - -0.1
130,621 + 15745 mRNA_7377 0.11 0.2
130,623 + 15745 mRNA_7377 0.12 1.9
130,645 - 15745 mRNA_7377 0.17 -0.9
130,645 + 15745 mRNA_7377 0.17 -1.5
130,658 + 15745 mRNA_7377 0.20 -3.1
130,669 + 15745 mRNA_7377 0.22 -2.5
130,704 + 15745 mRNA_7377 0.30 0.2
130,726 - 15745 mRNA_7377 0.35 1.4
130,739 + 15745 mRNA_7377 0.38 -0.6
130,742 + 15745 mRNA_7377 0.39 -2.0
130,743 + 15745 mRNA_7377 0.39 -1.1
130,759 - 15745 mRNA_7377 0.43 -1.5
130,992 - -1.0
131,043 + 1.3
131,139 - -1.2
131,164 - -1.5
131,165 + -3.1
131,292 + 0.2