Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7368

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7367: 15735 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 106324 to 107108 15735 mRNA_7368: 15736 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 107448 to 110616 15736 mRNA_7369: 15737 - KOG1203 Predicted dehydrogenase, at 111155 to 112314 15737

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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106,578 + 15735 mRNA_7367 0.32 -0.4
106,644 - 15735 mRNA_7367 0.41 -0.9
106,692 - 15735 mRNA_7367 0.47 -0.6
106,724 + 15735 mRNA_7367 0.51 -1.4
106,855 - 15735 mRNA_7367 0.68 2.5
106,887 - 15735 mRNA_7367 0.72 -0.7
106,892 + 15735 mRNA_7367 0.72 0.2
107,196 + -0.9
107,432 - -1.3
107,440 - -2.5
107,445 - -0.6
107,599 - 1.1
107,759 + -3.3
107,777 - 15736 mRNA_7368 0.10 -2.4
108,049 + 15736 mRNA_7368 0.19 0.1
108,310 - 15736 mRNA_7368 0.27 1.0
108,379 + 15736 mRNA_7368 0.29 -1.4
108,517 - 15736 mRNA_7368 0.34 0.1
109,180 - 15736 mRNA_7368 0.55 -0.5
109,474 - 15736 mRNA_7368 0.64 -1.5
109,518 - 15736 mRNA_7368 0.65 -1.2
109,942 + 15736 mRNA_7368 0.79 0.9
109,993 + 15736 mRNA_7368 0.80 0.0
110,134 - 15736 mRNA_7368 0.85 -0.5
110,272 + 15736 mRNA_7368 0.89 -2.5
110,411 - -1.9
110,411 - -0.2
110,573 + -1.2
110,688 + -2.0
110,708 + 0.0
110,727 + -2.7
110,728 - -0.7
110,731 + -1.1
110,743 + -3.3
110,745 - -1.9
110,747 - -1.9
110,750 + -0.8
110,750 - -2.3
110,755 + 0.6
110,757 + 2.0
110,763 + -0.6
110,764 + -0.8
110,851 - -2.0
110,878 - -1.4
110,886 - -1.4
110,892 - -1.9
110,904 + -0.0
110,904 + -0.9
110,905 - 0.1
110,929 - -0.7
110,945 - 0.0
110,949 - -3.2
110,950 + -0.7
110,958 + -0.4
110,979 - -3.1
111,011 - -0.8
111,022 + -2.6
111,023 - -1.3
111,034 + 0.2
111,040 - -4.0
111,178 - -2.4
111,225 + -1.2