Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7340

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38235 to 39594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39779 to 41768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41862 to 42699 15709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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38,891 + 15707 mRNA_7339 0.48 -1.0
38,904 - 15707 mRNA_7339 0.49 0.4
39,308 + 15707 mRNA_7339 0.79 -1.1
39,336 + 15707 mRNA_7339 0.81 -2.1
39,347 + 15707 mRNA_7339 0.82 -3.4
39,443 + 15707 mRNA_7339 0.89 -1.6
39,578 - -1.8
39,604 - -1.5
39,626 + -0.8
39,635 - -0.4
39,640 + 0.4
39,786 + -1.0
40,200 - 15708 mRNA_7340 0.21 -3.2
40,202 - 15708 mRNA_7340 0.21 -3.2
40,203 + 15708 mRNA_7340 0.21 -3.8
40,249 + 15708 mRNA_7340 0.24 -0.4
40,544 + 15708 mRNA_7340 0.38 -1.5
41,042 - 15708 mRNA_7340 0.63 1.1
41,059 - 15708 mRNA_7340 0.64 -1.3
41,340 - 15708 mRNA_7340 0.78 -0.0
41,525 + 15708 mRNA_7340 0.88 0.3
41,738 + -2.6
41,803 + -2.6
41,934 - -2.3
41,960 + 15709 mRNA_7341 0.12 -1.2
42,104 + 15709 mRNA_7341 0.29 -1.4
42,238 - 15709 mRNA_7341 0.45 0.6
42,344 + 15709 mRNA_7341 0.58 -3.0
42,392 - 15709 mRNA_7341 0.63 -1.4
42,697 - -1.0
42,701 + -1.8