Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7338

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33079 to 35089 15705 mRNA_7338: 15706 - K00451 HGD, hmgA homogentisate 1,2-dioxygenase, at 35529 to 37856 15706 mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38235 to 39594 15707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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34,604 + 15705 mRNA_7337 0.76 1.0
34,871 + 15705 mRNA_7337 0.89 -1.3
35,034 + -4.5
35,036 - -3.5
35,183 + -2.4
35,191 + -2.6
35,456 + -1.4
35,495 + -0.3
35,922 + 15706 mRNA_7338 0.17 -2.4
35,953 + 15706 mRNA_7338 0.18 -2.0
36,209 + 15706 mRNA_7338 0.29 -1.8
36,651 + 15706 mRNA_7338 0.48 -0.8
36,655 - 15706 mRNA_7338 0.48 -1.5
36,681 - 15706 mRNA_7338 0.49 1.0
36,795 - 15706 mRNA_7338 0.54 -2.6
37,930 - -0.3
37,934 + -1.5
37,975 - -1.2
37,980 - -2.2
37,987 + 0.2
37,999 - -1.6
38,003 + -1.8
38,130 - -1.8
38,321 - -0.9
38,336 + -0.8
38,451 + 15707 mRNA_7339 0.16 -0.7
38,465 + 15707 mRNA_7339 0.17 -1.5
38,635 - 15707 mRNA_7339 0.29 -2.6