Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7327

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12485 to 14861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15080 to 16504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16802 to 18584 15696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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14,287 - 15694 mRNA_7326 0.76 -2.7
14,307 + 15694 mRNA_7326 0.77 -0.7
14,508 + 15694 mRNA_7326 0.85 -2.0
14,779 + -1.8
14,794 - -0.9
14,908 + -1.3
14,911 - -1.0
14,911 - -1.0
14,920 + -0.6
14,945 - -0.9
14,945 - -2.9
14,958 + 0.3
14,972 + -2.9
14,989 + -1.1
14,993 + -1.1
15,064 - -2.0
15,090 - -0.7
15,104 + -2.2
15,370 - 15695 mRNA_7327 0.20 -1.6
15,373 + 15695 mRNA_7327 0.21 -1.0
15,541 + 15695 mRNA_7327 0.32 -0.6
15,545 + 15695 mRNA_7327 0.33 -2.4
15,548 + 15695 mRNA_7327 0.33 -2.2
15,721 + 15695 mRNA_7327 0.45 -0.5
15,781 + 15695 mRNA_7327 0.49 -2.0
15,781 - 15695 mRNA_7327 0.49 1.1
16,260 - 15695 mRNA_7327 0.83 -3.5
16,270 - 15695 mRNA_7327 0.84 -3.9
16,314 + 15695 mRNA_7327 0.87 -0.3
16,588 + -2.8
16,598 + -0.6
16,769 - 0.2
16,797 + -0.1
17,098 - 15696 mRNA_7328 0.17 -1.0
17,165 + 15696 mRNA_7328 0.20 0.2
17,318 + 15696 mRNA_7328 0.29 -2.6