Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7264

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1251489 to 1254335 15631 mRNA_7264: 15632 - Hypothetical Protein, at 1254558 to 1258564 15632 mRNA_7265: 15633 - Hypothetical Protein, at 1259174 to 1259392 15633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,254,469 + -2.1
1,254,487 - -1.9
1,254,609 + -0.7
1,254,633 - -0.6
1,254,640 + -2.2
1,254,695 - -0.8
1,254,784 + -0.3
1,254,951 - -1.2
1,254,957 + -4.0
1,255,007 + 15632 mRNA_7264 0.11 0.1
1,255,030 + 15632 mRNA_7264 0.12 -1.5
1,255,103 + 15632 mRNA_7264 0.14 -0.9
1,255,139 - 15632 mRNA_7264 0.14 -2.7
1,255,524 - 15632 mRNA_7264 0.24 -1.6
1,255,637 + 15632 mRNA_7264 0.27 -1.2
1,255,669 - 15632 mRNA_7264 0.28 -0.6
1,255,769 + 15632 mRNA_7264 0.30 -0.1
1,255,803 + 15632 mRNA_7264 0.31 1.4
1,255,814 - 15632 mRNA_7264 0.31 -0.0
1,255,884 + 15632 mRNA_7264 0.33 -2.5
1,255,894 + 15632 mRNA_7264 0.33 0.4
1,255,944 + 15632 mRNA_7264 0.35 -0.9
1,256,232 - 15632 mRNA_7264 0.42 -2.8
1,256,876 - 15632 mRNA_7264 0.58 -1.4
1,256,979 + 15632 mRNA_7264 0.60 -1.7
1,257,067 - 15632 mRNA_7264 0.63 -1.6
1,257,123 + 15632 mRNA_7264 0.64 0.8
1,257,412 - 15632 mRNA_7264 0.71 -0.3
1,257,436 - 15632 mRNA_7264 0.72 -3.3
1,257,547 - 15632 mRNA_7264 0.75 0.2
1,257,558 + 15632 mRNA_7264 0.75 -0.4
1,257,560 - 15632 mRNA_7264 0.75 -2.0
1,257,583 + 15632 mRNA_7264 0.75 -3.2
1,257,585 + 15632 mRNA_7264 0.76 -4.0
1,257,740 - 15632 mRNA_7264 0.79 -2.9
1,257,880 - 15632 mRNA_7264 0.83 -0.5
1,258,180 + -2.0
1,258,199 - -1.1
1,258,333 - -1.0
1,258,333 - -1.7
1,258,466 + -0.3
1,258,600 - -0.2
1,258,617 + -1.8
1,258,629 + -1.2
1,258,921 - -2.3
1,259,489 - -1.0
1,259,490 - -2.1
1,259,492 - -3.1
1,259,506 + -0.6
1,259,523 - -3.5