Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7195

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7194: 15562 - K12831 SF3B4, SAP49 splicing factor 3B subunit 4, at 1093562 to 1094787 15562 mRNA_7195: 15563 - KOG0519 Sensory transduction histidine kinase, at 1094977 to 1103696 15563 mRNA_7196: 15564 - KOG3329 RAN guanine nucleotide release factor, at 1104031 to 1104798 15564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,094,552 + 15562 mRNA_7194 0.81 -0.7
1,094,998 + -2.2
1,095,224 - -2.1
1,095,393 + -0.2
1,095,622 - -2.1
1,095,759 - -2.4
1,095,845 - 0.5
1,095,916 - 15563 mRNA_7195 0.11 0.2
1,095,992 + 15563 mRNA_7195 0.12 -2.8
1,096,155 - 15563 mRNA_7195 0.14 -2.4
1,096,337 + 15563 mRNA_7195 0.16 -0.1
1,096,383 - 15563 mRNA_7195 0.16 -2.9
1,096,925 - 15563 mRNA_7195 0.22 0.4
1,096,964 - 15563 mRNA_7195 0.23 0.1
1,097,196 + 15563 mRNA_7195 0.25 0.1
1,097,219 - 15563 mRNA_7195 0.26 0.7
1,097,471 - 15563 mRNA_7195 0.29 -0.3
1,097,946 - 15563 mRNA_7195 0.34 0.4
1,098,047 + 15563 mRNA_7195 0.35 -0.4
1,098,105 + 15563 mRNA_7195 0.36 0.3
1,098,285 - 15563 mRNA_7195 0.38 -0.2
1,098,637 - 15563 mRNA_7195 0.42 0.4
1,098,799 + 15563 mRNA_7195 0.44 -1.6
1,098,845 - 15563 mRNA_7195 0.44 0.4
1,098,957 + 15563 mRNA_7195 0.46 0.2
1,099,008 + 15563 mRNA_7195 0.46 -0.9
1,099,009 + 15563 mRNA_7195 0.46 -1.2
1,099,115 - 15563 mRNA_7195 0.47 1.4
1,099,133 + 15563 mRNA_7195 0.48 -2.1
1,099,143 + 15563 mRNA_7195 0.48 -2.6
1,099,331 - 15563 mRNA_7195 0.50 -1.8
1,099,451 - 15563 mRNA_7195 0.51 0.1
1,099,511 + 15563 mRNA_7195 0.52 -0.8
1,099,511 - 15563 mRNA_7195 0.52 -0.4
1,099,527 + 15563 mRNA_7195 0.52 -2.0
1,099,779 + 15563 mRNA_7195 0.55 -0.6
1,099,876 - 15563 mRNA_7195 0.56 -0.5
1,099,899 + 15563 mRNA_7195 0.56 -0.4
1,099,968 - 15563 mRNA_7195 0.57 -1.9
1,100,371 - 15563 mRNA_7195 0.62 -2.7
1,100,432 - 15563 mRNA_7195 0.63 -0.8
1,100,589 - 15563 mRNA_7195 0.64 -1.4
1,100,604 - 15563 mRNA_7195 0.65 -2.9
1,100,692 - 15563 mRNA_7195 0.66 -1.0
1,100,830 + 15563 mRNA_7195 0.67 -0.2
1,101,203 + 15563 mRNA_7195 0.71 -2.3
1,101,206 + 15563 mRNA_7195 0.71 -2.2
1,102,444 + 15563 mRNA_7195 0.86 0.7
1,102,765 - 15563 mRNA_7195 0.89 -3.3
1,102,777 - 15563 mRNA_7195 0.89 -3.0
1,102,789 + 15563 mRNA_7195 0.90 -1.3
1,102,790 - 15563 mRNA_7195 0.90 -0.5
1,102,926 - -1.6
1,102,934 - -0.1
1,103,214 + -1.1
1,103,238 + -2.8
1,103,378 - -0.6
1,103,475 - -1.7
1,103,480 + -1.6
1,103,491 - -1.1
1,103,503 - -1.4
1,103,505 + -3.4
1,103,507 - 0.2
1,103,520 - 0.4
1,103,526 + 0.5
1,103,529 + -3.0
1,103,655 - -3.1
1,103,657 + -2.1
1,103,657 - 0.1
1,103,668 - -0.4
1,103,752 + -0.7
1,103,795 - -0.7
1,103,795 - -1.9
1,103,804 - -0.9
1,103,807 - -1.1
1,103,993 + -1.3