Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7164

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7163: 15531 - Hypothetical Protein, at 1027440 to 1028287 15531 mRNA_7164: 15532 - K13117 DHX35 ATP-dependent RNA helicase DDX35, at 1028429 to 1031367 15532 mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1031482 to 1033004 15533

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,027,620 - 15531 mRNA_7163 0.21 -1.2
1,027,631 + 15531 mRNA_7163 0.23 -2.1
1,027,774 + 15531 mRNA_7163 0.39 -1.1
1,028,081 + 15531 mRNA_7163 0.76 -0.8
1,028,202 - 15531 mRNA_7163 0.90 0.2
1,028,203 - -1.2
1,028,204 + -1.1
1,028,208 - 0.4
1,028,214 + 1.1
1,028,214 + -0.8
1,028,216 + -0.7
1,028,224 - -1.7
1,028,239 + -1.6
1,028,380 + 0.8
1,028,390 + -3.1
1,028,409 - -1.4
1,028,416 + -0.1
1,028,472 - -1.5
1,028,485 + -1.2
1,028,513 + -1.6
1,028,528 + -2.2
1,028,528 - -0.5
1,028,672 - -2.6
1,028,688 + -0.7
1,028,924 + 15532 mRNA_7164 0.17 -2.4
1,029,009 + 15532 mRNA_7164 0.20 -3.6
1,029,195 - 15532 mRNA_7164 0.26 -3.3
1,029,405 + 15532 mRNA_7164 0.33 -0.6
1,029,865 + 15532 mRNA_7164 0.49 0.3
1,030,007 + 15532 mRNA_7164 0.54 -1.2
1,030,124 - 15532 mRNA_7164 0.58 -0.0
1,030,556 + 15532 mRNA_7164 0.72 -2.1
1,030,690 + 15532 mRNA_7164 0.77 -0.7
1,030,871 - 15532 mRNA_7164 0.83 -0.9
1,031,019 - 15532 mRNA_7164 0.88 -0.7
1,031,046 - 15532 mRNA_7164 0.89 -1.8
1,031,165 - 0.4
1,031,303 - -1.7
1,031,309 + -2.4
1,031,454 + 0.4
1,031,454 + -0.5