Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7144

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984352 to 987514 15511 mRNA_7144: 15512 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 988436 to 990722 15512 mRNA_7145: 15513 - BLAST putative ccch zinc finger dna binding protein [Eu..., at 991165 to 992673 15513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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987,791 - -0.9
987,800 + -0.6
987,922 + -2.3
988,061 - 0.2
988,070 + -3.3
988,083 - -2.8
988,194 - -0.9
988,202 + -0.3
988,211 - -0.7
988,219 + -2.6
988,606 - 1.1
989,094 - 15512 mRNA_7144 0.29 -2.1
989,721 + 15512 mRNA_7144 0.56 -0.8
990,289 + 15512 mRNA_7144 0.81 -1.3
990,447 - 15512 mRNA_7144 0.88 -0.5
990,595 + -2.9
990,867 - -2.5
990,963 + -1.0
991,313 + -1.1
991,525 + 15513 mRNA_7145 0.24 -4.0