Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7142

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976528 to 979510 15509 mRNA_7142: 15510 - HMMPfam-Domain of unknown function DUF221-PF02714,HMMPfam-Late exocytosis, associated with Golgi transport-PF13967, at 979628 to 983826 15510 mRNA_7143: 15511 - HMMPfam-Protein of unknown function (DUF2421)-PF10334,HMMPfam-Fusaric acid resistance protein-like-PF13515,PRINTS-Brefeldin A-sensitivity protein 4 signature-PR02047,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 984352 to 987514 15511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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978,714 - 15509 mRNA_7141 0.73 -2.2
978,844 + 15509 mRNA_7141 0.78 -0.9
979,150 + 15509 mRNA_7141 0.88 -2.1
979,194 - 15509 mRNA_7141 0.89 -0.8
979,556 - 0.6
979,793 + -2.5
979,983 - -2.8
980,035 + -2.2
980,101 + 15510 mRNA_7142 0.11 -0.8
980,103 - 15510 mRNA_7142 0.11 -0.9
980,283 - 15510 mRNA_7142 0.16 0.1
980,512 + 15510 mRNA_7142 0.21 -2.9
980,544 + 15510 mRNA_7142 0.22 -1.0
980,655 - 15510 mRNA_7142 0.24 -0.9
980,714 - 15510 mRNA_7142 0.26 0.4
980,739 - 15510 mRNA_7142 0.26 1.8
980,793 + 15510 mRNA_7142 0.28 -0.5
981,183 + 15510 mRNA_7142 0.37 -0.0
981,330 + 15510 mRNA_7142 0.41 -1.2
981,492 - 15510 mRNA_7142 0.44 -0.4
981,516 + 15510 mRNA_7142 0.45 -1.2
981,516 + 15510 mRNA_7142 0.45 -0.7
981,765 + 15510 mRNA_7142 0.51 0.0
981,830 + 15510 mRNA_7142 0.52 1.2
982,146 - 15510 mRNA_7142 0.60 -1.3
982,536 + 15510 mRNA_7142 0.69 -2.7
982,673 + 15510 mRNA_7142 0.73 1.6
982,706 + 15510 mRNA_7142 0.73 -2.4
982,814 + 15510 mRNA_7142 0.76 -1.0
982,986 + 15510 mRNA_7142 0.80 -0.8
983,265 - 15510 mRNA_7142 0.87 -1.5
983,415 + -1.6
983,546 + -1.2
983,695 - -1.9
983,707 - -3.1
983,717 - -0.8
984,006 - -0.8
984,154 + -2.7
984,577 - 0.3
984,578 - -1.5
984,608 + -1.4
984,624 + -1.2